similar to: Registering method for "t.test"

Dear R Developers, the new simplify argument in apply causes that my package (hsdar) does not pass the checks in R-devel. The workaround, Kurt Hornik send me, is working for the R-code: if("simplify" %in% names(formals(base::apply))) do something else do something else Unfortunately, I cannot conditionalize the man pages of the functions. I get the message that

Interesting problem. I'm very rusty on S4 but would one solution be to, already now, add 'simplify = TRUE' to the S4 method and document it; setMethod("apply", signature(X = "Speclib"), function(X, FUN, bySI = NULL, ..., simplify = TRUE) { ? Henrik On Fri, May 22, 2020 at 6:26

hsdar is back on CRAN We are very happy to announce that a new version of the hsdar-package (hyperspectral data analysis in R) is available on CRAN. The introductory vignette is available here: https://cran.r-project.org/web/packages/hsdar/vignettes/Hsdar-intro.pdf The main class "Speclib" has been changed in that the additional information is now stored in the SI slot (function

You didn't explained what the error is. This is what it looks like to me, but I'm probably wrong in some details: 1. R-devel added an argument to the apply() function, so the header has changed from function (X, MARGIN, FUN, ...) to function(X, MARGIN, FUN, ..., simplify = TRUE) 2. Your package converted the function apply() to an S4 generic. 3. Now the signatures of your

I recently submitted a package to CRAN which encompasses Fortran 90 code. Neither on my linux system nor on the win-builder system the compilation reported any error or warning. The function worked fine. However, after submission of the package to CRAN, I received an email that I should not include Fortran 90 code. The problem is that the part written in Fortran is a large function using

I would like to run a t-test within a "by" group function. My dataset, "error", is organized as the following (I have 133 Sites): Site week Dataset Region lat_map long_map mean_tsim diff20 diff40 diff80 ALFI 15 USACE UC 48.15625 -117.0938 8.87 1.34 1.90 2.98 ALFI 16 USACE UC 48.15625 -117.0938 10.28 0.57 1.08 2.27 ALFI 17

R-exts.pdf discribes S3method a little bit. But I want to understand more on how it is called, implemented and when to use it. I don't find it in an R session. But I see S3method() in some NAMESPACE files. > S3method Error: object 'S3method' not found > ?S3method No documentation for 'S3method' in specified packages and libraries: you could try '??S3method' I

Hi, from the man page ?methods, I expected to be able to build pairs (class,package) for a given S3 method, e.g., print, using attr(methods(print), 'info'). However all the methods, except the ones defined in base or S4 methods, get the 'from' value "registered S3method for print", instead of the actual package name (see below for the first rows). Is this normal

I am writing my first R package, and I have been getting the following series of errors when I run R CMD check: * checking S3 generic/method consistency ... WARNING Error: package/namespace load failed for 'REEMtree' Call sequence: 2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), call. = FALSE, domain = NA) 1: library(package,

I am cleaning up the rms package to not export functions not to be called directly by users. rms uses generic functions defined in other packages. For example there is a latex method in the Hmisc package, and rms has a latex method for objects of class "anova.rms" so there are anova.rms and latex.anova.rms functions in rms. I use:

CCing r-devel. On Tue, 14 May 2019 at 02:11, Pavel Krivitsky <pavel at uow.edu.au> wrote: > > Dear All, > > I've run into this while updating a package with unfortunately named > legacy functions. It seems like something that might be worth changing > in R, and I want to get a sense of whether this is a problem before > submitting a report to the Bugzilla. > >

Hello, I try to set up namespaces for packages. It is fine for several of them, except one whose compilation fails (under Windows XP & R 2.0.0): ---------- Making package svViews ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata Error in parse(file, n, text, prompt) : syntax error on line 21 Execution halted make[2]: *** [nmspace] Error 1 make[1]: ***

[Env: R 2.11.1, Win Xp, using Eclipse/StatET] In a package I'm working on, I want to create as.matrix() and as.array() methods for a particular kind of object (log odds ratios). These are returned in a loddsratio object as the $coefficients component, a vector, but really reflect an underlying (R-1)x(C-1)xstrata array, whose attributes are contained in other components. I define coef,

Dear all, I have defined a generic as.ff(x, ...) and a method as.ff.function(x, ...) which converts a standard R function x into a chunked version operating on large ff objects. Everything works fine, but when registering S3method("as.ff",function) in NAMESPACE, the installation fails with some kind of parsing error: adding build stamp to DESCRIPTION installing NAMESPACE file

I posted on this topic to r-help, but never got a sufficient answer, so I'm reposting here. [Env: R 2.11.1, Win Xp, using Eclipse/StatET] In a package I'm working on, I want to create as.matrix() and as.array() methods for a particular kind of object (log odds ratios). These are returned in a loddsratio object as the $coefficients component, a vector, but really reflect an underlying

Hi In NEWS, it says R CMD check now tests that the package can be loaded, and that the package and namespace (if there is one) can each be loaded in startup code (before the standard packages are loaded). For package "onion", I think I have followed all of sections 1.6.1 - 1.6.6 of R-exts, and it passes R CMD check for R-2.3.1. However, using R version 2.4.0 Under

Dear All, In R 3.6.3 (and earlier), method dispatch used to work for methods stored in local environments that are attached to the search path. For example: myfun <- function(y) { out <- list(y=y) class(out) <- "myclass" return(out) } print.myclass <- function(x, ...) print(formatC(x$y, format="f", digits=5)) myfun(1:4) # prints: [1]

I have updated the rms package to extensively use NAMESPACE. I cannot get certain S3 methods to dispatch. For example I have in NAMESPACE S3method(anova, rms) S3method(latex, anova.rms) anova.rms produces an object of class "anova.rms" and there is a latex.anova.rms function in rms. But when I do latex(anova(fit)) I get an invocation of latex.default. I have tried using

On Tue, 14 May 2019 at 12:31, Pavel Krivitsky <pavel at uow.edu.au> wrote: > > > Note that disabling name-based dispatch implies two things: 1) the > > inability to override your method by defining gen.formula in the > > global environment, and 2) another package can break yours (i.e., > > internal calls to gen()) by registering an S3 method for gen() after >

sshd disconnects openssh-4.1p1 on IBM p690 AIX 5200-05 using: openssl-0.9.7g zlib-1.2.2 openssh-4.1p1 CC="gcc -O0 -maix64" ./configure #- 64-Bit !!! Compiles ok. ssh works fine. sshd starts, accepts password, user authenticated and then disconnects. Debug log of both sshd and trying-to-connect client (3.9p1-3.2 on Linux) are enclosed. For test purposes por 3333