similar to: Version Upgrade and Packages

Displaying 20 results from an estimated 10000 matches similar to: "Version Upgrade and Packages"

2012 Jul 18
2
cenbox(): Changing Default x-axis Group Labels
I've looked at the lattice book and the 'R Graphics Cookbook' without seeing how to change the labels along the x axis for groups in a box plot, specifically cenbox(). The attached example has a main and axes labels with default group labels. Please point me to a reference on how I can change 'FALSE' and 'TRUE' to something more easily understood by viewers. TIA,
2013 Feb 04
3
Modifying Package Data
The bio.infer package contains a data frame /usr/lib/R/library/bio.infer/data/itis.ttable.rda that needs to be modified. After loading the bio.infer package and attaching the data frame with the data() function, I wrote the data frame to a text file. After adding another row to the data frame I applied read.table() to create a data frame, but it's in my pwd, not the R library data
2012 Jul 03
2
NADA Data Frame Format: Wide or Long?
I have water chemistry data with censored values (i.e., those less than reporting levels) in a data frame with a narrow (i.e., database table) format. The structure is: $ site : Factor w/ 64 levels "D-1","D-2","D-3",..: 1 1 1 1 1 1 1 1 ... $ sampdate: Date, format: "2007-12-12" "2007-12-12" ... $ preeq0 : logi TRUE TRUE TRUE TRUE TRUE
2012 Jul 10
2
Understanding cenros Error
Before reading water chemistry into a data frame I removed all missing data. Yet when I try to run cenros() to summarize a specific chemical I get an error that I do not understand: with( subset(chem, param=='Ag'), cenros(quant,ceneq1) ) Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : NA/NaN/Inf in 'y' I would like to learn what I did incorrectly
2012 Dec 05
4
Changing data frame column headings
I have a reshaped data frame with value column headings concatenated from two column headings in the melted data frame. I want to change all 56 headings in a single command, but 'names' allows me to change only one at a time. In Hadley's 2007 article on reshape in the Journal of Statistical Software he mentions a 'rename' function, but I cannot find that. Is there a way to
2012 Aug 07
3
NADA Package: Referencing Data Frame Columns
The sample data sets that come with the NADA package are limited to one or two variables and a censored measurement indicator column. I try to mimic examples using my data but keep missing the target. My water chemistry data is available in two formats: long (as seen in a database table) and wide (as seen in a spreadsheet). The two structures are: str(chem) 'data.frame': 65349 obs. of
2011 Oct 04
3
How to subset() from data frame using specific rows
I have a data frame called chemdata with this structure: > str(chemdata) 'data.frame': 14886 obs. of 4 variables: $ site : Factor w/ 148 levels "BC-0.5","BC-1",..: 104 145 126 115 114 128 124 2 3 3 ... $ sampdate: Date, format: "1996-12-27" "1996-08-22" ... $ param : Factor w/ 8 levels "As","Ca","Cl",..:
2012 Aug 07
3
reshape2's dcast() Adds NAs to Data Frame
I need to understand how and why dcast() adds NAs to a data frame that contained no missing values. The database table of chemical concentrations has all missing values removed because they cannot contribute to data analyses. The structure of the R data frame of these data have no NA values, and neither does the data frame resulting from applying the reshape2 melt() function to it. However,
2012 May 17
3
New Eyes Needed to See Syntax Error
One of many scripts to produce 4 lattice plots on one page keeps throwing an error. I've tried manipulating the file to eliminate the error, but have not been able to do so. The error is: > source('bicarb.R') Error in source("bicarb.R") : bicarb.R:15:1: unexpected symbol 14: 15: hco33 ^ The 'h' is in column 0 so the caret would be column -1, but it's
2013 Jan 18
3
longitudinal study
Hello R user, I have a data set from a longitudinal study ( sample below) where subjects are followed over time. Second column (status) contains info about if subject is dead or still in the study and third column is time measured in the week. Here is what I need: if status is not dead or unknown take the last week, if status is dead or unknown I need to have corresponding week. Desired resulst:
2018 Mar 14
1
Fwd: Learning advanced R
Hi Albrecht, I am forwarding your reply to the full group. It's been a while since I did this and I don't remember the details. Maybe someone else can comment. (I am a bit busy at the moment.) If no one supplies the information in a few days I will try to take a look. In the meantime you can start your reading on-line. :-) Regards, Eric Dear Eric, I downloaded the material from
2012 Aug 15
1
NADA package/cenboxplot() method: maximum censored percentage
One set of data has censored (less-than detection limits) water chemistry concentrations for 80-100% of all observations. My initial trial-and-error attempts to apply the cenboxplot() method suggests that it has an upper limit to the percentage of censored observations. I do not see this limit in Dennis Helsel's second edition. Has anyone experience plotting censored data and can provide
2011 Sep 19
4
Results of applying na.omit on zoo object
I read in ?na.omit that it returns the object with incomplete cases removed. I interpret this to mean that any zoo object row where any column shows 'NA' will be removed from the data set. That's not what I need, since the 'NA' represents information in my context. However, what I would like to do is eliminate the rows where every column is 'NA'. When I aggregate
2011 Oct 21
2
Working With Variables Having Different Lengths
Because of regulatory requirement changes over several decades and weather conditions preventing site access the variables in my data set have different lengths. I'd like guidance on how to perform linear regressions and other models with these variables. For example, there are 2206 rows for the parameter "TDS" but only 1191 rows for the parameter "Cond." Such
2013 Feb 22
4
Controlling Order of Panels in Lattice Trellis Plots
With multiple panels in a lattice trellis plot the sequence is, for example, 1, 10, 11, 12, 2, 3, 4. I want the sequence to be 1, 2, 3, 4, 10, 11, 12. Reading ?strip.default and the appropriate section in the Lattice book I'm not seeing how to specify the 'human' numeric order rather than the computer numeric order. A pointer will be appreciated. TIA, Rich
2013 Jan 31
2
rbind Missing Something: Need New Eyes
I don't see what's missing in my statements to add rows to a data frame and someone else will probably see what needs to be added to the statements. The data frame has this structure (without any data): $ PHYLUM : chr $ SUBPHYLUM : chr $ SUPERCLASS : chr $ CLASS : chr $ SUBCLASS : chr $ INFRACLASS : chr $ SUPERORDER : chr $ ORDER : chr $ SUBORDER :
2012 Apr 24
2
Errors Updating Libraries (2.15)
I just upgraded from 2.14 to 2.15 and have run into an issue upgrading libraries that I've not had in previous version upgrades. For example, trying to install reshape2 for 2.15 throws errors and I don't see what to change to over come the problem: > install.packages("reshape2") Installing package(s) into ?/home/rshepard/R/i486-slackware-linux-gnu-library/2.15? (as ?lib? is
2011 Sep 22
3
Bivariate Scatter Plots with Lattice
Data frame has this structure: 'data.frame': 11169 obs. of 4 variables: $ stream : Factor w/ 37 levels "Burns","CIL",..: 1 1 1 1 1 1 1 1 1 1 ... $ sampdate: Date, format: "1987-07-23" "1987-09-17" ... $ param : Factor w/ 8 levels "As","Ca","Cl",..: 1 1 1 1 1 1 1 1 1 1 ... $ quant : num 0.01 0.01 0.01 0.01
2018 May 26
4
update.packages() after updating R version
R-3.5.0 is installed here. When I tried to update installed packages errors were reported when their dependencies were built under a prior version of R. Reading ?update.packages() I did not see an option that would automatically update dependences built under an earlier version of R. Is there such an option that I missed? Alternatively, is there a function I can run that will rebuild all
2011 Sep 22
3
Identifying Package for Function
While reading ?subset I'm referred to learn about dropvalues() as a following operation. Yet, when I issue ?dropvalue I see, "No documentation for '?dropvalues' in specified packages and libraries:". How do I identify the library/package that contains a specific function such as, in this case, dropvalues()? Rich