similar to: help with R CMD check --as-cran

Robin Hankin's post reminded me to post about the following recent addition to 'Writing R Extensions', in the section on 'Submitting a package to CRAN' Ensure that the package sources are not unnecessarily large. ... As a general rule, doc directories should not exceed 5Mb, and where data directories need to be 10Mb or more, consideration should be given to a

Today, a package that has an HTML vignette (but no PDF vignette) failed R CMD check --as-cran on a system without qpdf. I think the warning originates here [1], due to a premature check for the existence of qpdf [2]. Setting R_QPDF=true (as in /bin/true) helped, but perhaps it's possible to check qpdf existence only when it matters. I have attached a patch (untested) that could serve as a

On 05/11/2017 06:49 PM, Leon Fauster wrote: >> Am 11.05.2017 um 22:26 schrieb ken <gebser at mousecar.com>: >> >> pdftk used to be in a repo... or maybe it still is, but I don't know which one. Anyone know? >> > an old one is in the "dead" rpmforge repo. > At https://www.pdflabs.com/docs/install-pdftk-on-redhat-or-centos/ they have version 2.0

I would like to include a Mathematica notebook and cdf file (both are ASCII files) in the \inst\doc directory as supporting documentation. These files are not large, about 340K each one. When I check using R CMD check --as-cran ... I get the following warning: ...................... * checking data for ASCII and uncompressed saves ... OK WARNING 'qpdf' is needed for checks on size

[Env: OS: Win Xp; R 2.15.2; IDE: eclipse/StatET] Each time I update my heplots package, I get warnings from R CMD check on R-Forge, * checking sizes of PDF files under ?inst/doc? ... WARNING ?gs+qpdf? made some significant size reductions: compacted ?HE-examples.pdf? from 739Kb to 366Kb and upon submission to CRAN, a message from maintainers: On CRAN now: but again there were warnings

On Mon, Dec 15, 2014 at 6:55 AM, Tom Callaway <tcallawa at redhat.com> wrote: > As pointed out, this is no longer an issue in R 3.1.2, which is in all > Fedora branches (except 21, where it is landing later today, hopefully). Thank you. Another missing dependency pops up when running CMD check: * checking compiled code ... OK WARNING ?qpdf? is needed for checks on size

Buenas tardes a todos, Estoy interesado en realizar varios gráficos y luego guardarlos individualmente como PDF. Hasta ahí todo bien. Sin embargo, el archivo resultante tiene aproximadamente 20MB. Podría alguien por favor indicarme cómo reducir su tamaño? A continuación un ejemplo de lo que intento hacer y mi sessionInfo(). Estoy usando Mac OS X. Muchas gracias, Jorge Ivan Velez # R code

My CMD check server started failing after upgrading to Fedora 21: LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: File `upquote.sty' not found. The problem was easily resolved by installing texlive-upquote. Perhaps this package should be included as a dependency to the R-devel package?

Hi all, I'm trying to customize the nls function code to spit out the sd and mean of the new fit. All it gives me are the fitted values. THis function seems to work fine for my project otherwise. All i need is the SD and MEAN. Can someone help me to customise. I frankly did not understand the nls code at all. I have 10 x and 10 y values from a histogram. I need to use nls to do the best fit

Hi all, My data genes [,1] [,2] [,3] [,4] [1,] 25 72 23 55 [2,] 34 53 41 33 [3,] 26 43 26 44 [4,] 36 64 64 22 [5,] 47 72 67 34 stu<-t.test(genes[,1:2],genes[,3:4]) > stu$p.value [1] 0.4198002 i get 1 pvalue for the entire col1:col2 Vs col3:col4. I am trying to get 5 p values for the 5 rows i have. I am trying to avoid a for loop coz my

Was having problems getting NT Workstation to see the samba server as the PDC and do domain logins (Win9x does just fine). Then found this comment in Sam's Teach Yourself Samba in 24 hours with regard to configuring a samba PDC: "You need to configure the server to be in user-level security and you must enable password encryption. There is no way around either of these settings."

Hi all, I'm trying to use the nls function to do a nls curve fit. I have a histogram for my data. I need to get athe best curve fit for this. i am plotting experimental vs the theoretical values. my experimental values are got from my dnorm function, mean=mean of my mid values(hist) and sd=sd of my mid values. For the theoretical i'm using mean and sd of all 20000 raw values as the start

I'm trying to overlay a density plot on a previously plotted histogram. However, i need to use the same axis as of the 1st(histogram) plot to plot the second. My second plot is creating its own axis and causing my plot to extend the entire histogram instead of getting a subplot on a portion of the histogram. I tried 'fig' and 'new' parameters with no luck. Thanks in advance.

Hi, my vector V<- c(1,0.5,0.06,0.056,0.01,0.04,0.4,0.9,0.82,0.1) if( V > 0.5) { V <- 1 - V } I get a warning saying only the first element will be used in comparing (if V > 0.5). However, my results tell me vis-versa ,it actually compares every element of the vector V with 0.5 and that is waht i want it to do. Using a for loop is expensive and time consuming since my actual

i'm coding in R(first time) for a paper my colleague is publishing. i plotted a histogram for 6000 values. Taking the mean and sd of the midpoints i did a dnorm and got the densities. pl<-dnorm(trimmedvals,mean=midsmean,sd=midsSD) (now in a loop of 5 times) i plotted these experimental values against theoretical values using the nls function the following way.

On Thu, 11 May 2017, ken wrote: > On 05/11/2017 07:07 PM, ken wrote: >> On 05/11/2017 06:49 PM, Leon Fauster wrote: >>>> Am 11.05.2017 um 22:26 schrieb ken <gebser at mousecar.com>: >>>> >>>> pdftk used to be in a repo... or maybe it still is, but I don't know >>>> which one. Anyone know? >>>> >>> an old

Hello! I would love to use R for the following 2 tasks, but am unable to determine if R is well suited for this. My primary question- is this possible in R? Secondary- if yes, how? We routinely use MatLab with the Statistics Tool Box to manipulate and plot a 2 dimensional matrix (m x n) of real numbers. If you think of each dimension as an array of vectors (e.g. a collection of m vectors

Hi all, I think the last time i posted this topic i started on the wrong foot. Thnaks alot to everyone who responded. i'm coding in R(first time) for a paper my colleague is publishing. i plotted a histogram for 6000 values. I am told to plot experimental vs theoretical vlaues from the histogram and do a non linear least square curve minimization and compute the mean and sd of the new x

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421Kb to 115Kb consider

How can I receive parameter estimates for a given curve that has been fit with the NLS function. The problem is that I have a "n parameter" curve and I want the optimal fit. The NLS procedure gives me final function values and not the individual parameter estimates that were used to define this "best" fit. What function can I use to get these parameters? Thanks