similar to: Issues with installing RBGL package

Hi all, I was installing a package *RBGL* of bioconductor. However, I had some issues while installing it. I asked the devel group of bioconductor and they told me to consult this group. Here is my conversation with the bioconductor group related to the problem *Me->* I was trying to install the RBGL package using the following command biocLite("RBGL") However, I got the

Hi there, I am doing some network analysis working with k-cliques and over time I want to see what nodes are members of what cliques and how big these cliques are. I have managed to produce a matrix which shows which k-cliques each node is part of over the 100 time periods (slow though) but I cannot seem to calculate the size of each k-clique which is actually just a count. Basically I have a

Hi I've been trying to install RBGL and several other packages in gR task view on Fedora11 64 bit without success My guess is that it is due to boost (fedora is at boost 1.37 which is a few minor versions behind 1.40) and very recent g++ Has anyone managed to install the gR task view or RBGL in particular? Thanks Cheers Peter ======== [root at SPH-PH-428-04P ~]# gcc --version gcc (GCC)

Dear all, I am trying to run the function "lambdaSets" using the package "RBGL". This package uses another package "graph" which has been removed from the CRAN repository, but is available at the archive (http://cran.r-project.org/src/contrib/Archive/graph/). I installed the package from the R menu at "install packages from local zip files" (after

I've just installed Debian Lenny and RBGL fails compilation with the following errors (sessionInfo() follows). * Installing *source* package 'RBGL' ... untarring boost include tree... ** libs g++ -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -c bbc.cpp -o bbc.o In file included from /usr/include/c++/4.3/ext/hash_set:64,

Dear all, I'm having some problems getting my recursive function to work. At first I though that maybe my data was too big and I increase option(expressions=50000). Then I thought that I would try it on some smaller data. Still not working. :( I would have thought there should be a function for this already, so any suggestions are welcomed for other methods. I did try igraph but couldn't

Dear R Users, I am looking clique a graph technique, to identify the values from the dataset. I tried with help.search("graph") it show's the graphics related stuff Is there any package that i can use to find Clique in a dataset? Thanks in Advance JJ -- Lecturer J. Joshua Thomas KDU College Penang Campus Research Student, University Sains Malaysia [[alternative

Hello everyone, I am an italian student who is working with packages SNA (social network analysis) and network. I ask you if there is a simple way to write a R-script using these packages to extract from an adjacency matrix the following things: -number of cliques which are in the network; -number of k-cores (e.g. 3-cores, 4-cores); -cycles (e.g. 3-cycles, 4-cycles) -hub & authorities.

Dear R users I need to solve the finding all cliques in a graph problem, is there a R package implementing Bron-Kerbosch algorithm? Many thanks YAn ********************************************************************** This email and any files transmitted with it are confide...{{dropped:10}}

On Apr 18, 2013, at 9:45 AM, dag at cray.com wrote: > I'm working on the post-regalloc dataflow engine I mentioned yesterday. > Currently I only need to track register operands. > > A MachineOperand has both a getReg() and a getSubReg() interface. For a > physical register operand, is getReg() guaranteed to be the "most super" > register with getSubReg()

Hi I'm trying to install the RBGL package. However I am getting the following error; can anybody shed some light on what I'm missing? /usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared Thanks. Iain > sessionInfo() R version 2.7.2 (2008-08-25) i486-pc-linux-gnu locale:

Filed a bug with Apple 10073924  but I'm wondering if anyone else knows what to fix here: Summary: Building a Darwin cross compiler so I can use distcc with my Mac. Host: x86_64-gnu-linux with GCC 4.5.3. Steps to Reproduce: Download tar ball tar xvf llvmgcc42-2335.15.tar.gz mkdir gcc-build cd gcc-build CFLAGS="-w -m32" CXXFLAGS="$CFLAGS" CPPFLAGS="$CFLAGS"

Again i have problem in locating the package for clique-graphs I tried with BioConductor under Browse for packages, it doesn't work atall. Kindly guid me Thanks JJ On 8/23/06, Seth Falcon <sfalcon@fhcrc.org> wrote: > > "j.joshua thomas" <researchjj@gmail.com> writes: > > > Dear Robert, > > > > Thanks for your time. > > I have

I'm working on the post-regalloc dataflow engine I mentioned yesterday. Currently I only need to track register operands. A MachineOperand has both a getReg() and a getSubReg() interface. For a physical register operand, is getReg() guaranteed to be the "most super" register with getSubReg() providing the specific subregister information for the operand? If so then for my current

Hello: I've been trying for days now to get igraph working on a debian sarge install. There does not appear to be any pre-built packages, and when I try and install within R, it blows up on the final linking, claiming its unable to find libgfortran (which IS installed, and IS working for all other users of the compiler). I started up R and ran: install.packages("igraph"). It

On Monday 24 April 2006 04:50 am, Tom Spear (Dustin Booker, Dustin Navea) wrote: > n0dalus wrote: > > In a way this holds for mailing lists as well, but I think > > the difference is that forums usually have: > > - Large sections containing non-technical discussion > > - 'Post counts', often used as a measure of status > > - Signup date, also used as

Hi, Nuno and Arnold: Thank you all for the input. Let me coin a term, say "clique" for this discussion to avoid unnecessary confusion. A clique is statically or dynamically allocated type-free stretch of memory. A "clique" 1) is maximal in the sense that a clique dose not have any enclosing data structure that can completely cover or, partially

Full_Name: Christian Kuehnert Version: 2.7.1 OS: Windows XP Submission from: (NULL) (91.14.237.109) Hello, I've installed the package RBGL (and XML and Rgraphviz) and tried to follow the examples in the RBGL-manual http://bioconductor.org/packages/2.2/bioc/vignettes/RBGL/inst/doc/RBGL.pdf But when I try to plot the graph using e.g. plot(dijk) an error message occurs: "Error in

On Feb 27, 2013, at 12:37 PM, Shuxin Yang <shuxin.llvm at gmail.com> wrote: > Hi, Nuno and Arnold: > > Thank you all for the input. > > Let me coin a term, say "clique" for this discussion to avoid unnecessary confusion. > A clique is statically or dynamically allocated type-free stretch of memory. A "clique" > 1) is maximal in the sense

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes