Displaying 20 results from an estimated 90 matches similar to: "Remove site path from .libPaths"
2006 Sep 06
4
problem with putting objects in list
Hi
I use the following code and it stores the results of density() in the
list dr:
dens <- function(run) { density( positions$X[positions$run==run], bw=3,
cut=-2 ) }
dr <- lapply(1:5, dens)
but the results are stored in dr[[i]] and not dr[i], i.e. plot(dr[[1]])
works, but plot([1]) doesn't.
Is there any way that I can store them in dr[i]?
Thanks a lot,
Rainer
--
Rainer M. Krug,
2006 Dec 01
2
specify point shape for ggplot (equivalent to pch)?
Hi
is it possible to specify the shape of the point to be used in ggplot
(as with pch in plot)? I couldn't find anything in the help.
Thanks
Rainer
--
Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation
Biology (UCT)
Department of Conservation Ecology and Entomology
University of Stellenbosch
Matieland 7602
South Africa
Tel: +27 - (0)72 808 2975 (w)
Fax: +27 - (0)86 516 2782
Fax:
2006 Sep 20
4
Calculating mean together with split
Hi
I have a table called npl containing results of simulations.
It contains about 19000 entries and the structure looks like this:
NoPlants sim run year DensPlants
1 6 lng_cs99_renosterbos 1 4 0.00192
.
.
.
it has 43 different entries for sim and year goes from 1 to 100, and run
from 1 to 5.
I would like to calculate the mean of DensPlants for each
2007 Sep 20
2
referencing packages?
Hi
I know how to referenc R in a scientific paper - but is there a
standardised way to reference packages?
Thanks
Rainer
--
NEW EMAIL ADDRESS AND ADDRESS:
Rainer.Krug at uct.ac.za
RKrug at sun.ac.za WILL BE DISCONTINUED END OF MARCH
Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation
Biology (UCT)
Plant Conservation Unit
Department of Botany
University of Cape Town
Rondebosch 7701
2006 Sep 22
1
Update to Dillo browser question
Hi
I asked about if there is any way of opening URLs from the help browser
in the same window of the same dillo browser - here is the answer.
Just to reiterate: dillo is for me the perfect browser for the help of R
when you use ?...
Rainer
-------- Original Message --------
Subject: Re: [Dillo-dev] Opening new URL in same instance and -s option
Date: Thu, 21 Sep 2006 21:31:57 -0400
From:
2005 Dec 15
2
Why is bubbles() creating empty png graphs?
This code below produces empty XXX.png files - if I use plot(), it works
and if I enter the commands
png(filename=fn)
bubble(positions, do.sqrt=FALSE, main=q)
dev.off()
manually, it works as well.
I am lost - any help appreciated.
The weird thing is that it worked before I made some changes... (I don't
have a copy of the working version...).
R version:
platform i686-pc-linux-gnu
arch
2007 Oct 01
4
Concatenating one character vector into one string
Hi
I am sure this is simple - but how can I convert one charecter vector
into one string?
example:
x <- c("This ", "is ", "one ", "sentence.")
should become
"This is one entence"
Thanks
Rainer
--
NEW EMAIL ADDRESS AND ADDRESS:
Rainer.Krug at uct.ac.za
RKrug at sun.ac.za WILL BE DISCONTINUED END OF MARCH
Rainer M. Krug, Dipl. Phys.
2008 Nov 19
1
C++ code from R
Hi
I managed to compile (and use) C code from R, but now I have to use C++ code.
After reading "Writing R extensions", I came up with the following
code, which compiles fine
-------------------
// emdL1_R.cc:
#include <time.h>
#include <stdio.h>
#include "emdL1.h"
extern "C"
{
void emd_L1(
double *H1, int *n1,
double *H2, int *n2,
2005 Dec 20
1
Problems installing R 2.1.1. from rpm (R-base-2.2.0-1.i586.rpm) on SuSE 10
Hi
I have problems installing R 2.1.1. from rpm (R-base-2.2.0-1.i586.rpm)
on SuSE 10. It installs fine, all dependances are OK (at least Yast does
not complain) but when I try to run R, it gives the following error message:
symbol lookup error: /usr/lib/libblas.so.3: undefined symbol:
_gfortran_filename
and R quits.
blas version: 3.0-926
Any help appreciated,
Rainer
--
--
Rainer M.
2006 Sep 21
1
transforming factor back to numbers
Hi
I generate a new dataframe by doing:
npl.agg <- aggregate(npl$DensPlants, list(year=npl$year, sim=npl$sim),
mean, na.rm=TRUE )
Now I want to plot it by using
coplot(npl.agg$x ~ npl.agg$year | npl.agg$sim, type="l")
but, as npl.agg$year is seen as a factor, the order of the points on the
x-axis (time axis) does not follow the numerical sorting 1...100, but
rather the text
2006 Sep 20
5
Beginners manual for emacs and ess
Hi
I heard so much about Emacs and ESS that I decided to try it out - but I
am stuck at the beginning.
Is there anywhere a beginners manual for Emacs & ESS to be used with R?
even M-x S tells me it can't start S-Plus - obviously - but I want it to
start R...
Any help welcome (otherwise I will be stuck with Eclipse and R)
Rainer
--
Rainer M. Krug, Dipl. Phys. (Germany), MSc
2008 Aug 01
1
bug in readRAST6 function in package spgrass6
Hi
if I try to import a raster layer which consists only of NULL values
from grass by using the readRAST6, I get an error message:
> readRAST6("HSericea_seedsDisperse_2007")
ERROR: Invalid value for null (integers only)
Error in readBinGrid(rtmpfl11, colname = vname[i], proj4string = p4,
integer = to_int) :
no such file:
2006 Oct 25
3
simplification of code using stamp?
Hi
I have the following code which I would like to simplify. Id does linear
regressions and returns the r-squares, and the coefficients.
It runs slow, as it is doing the regressions for each - is it possible
to get the values in a dataframe which looks as follow:
expert | xx | seeds | r.squared | slope | intercept
Thanks in advance,
Rainer
library(reshape)
rsqs <- as.data.frame(
2006 Mar 23
4
Create graphs from text console
Hi
I am using R 2.2.1 under Linux (SuSE 10) and would like to know if it is
possible to create graphs, i.e.
jpeg(filename=fn)
try( coplot( mor$I_Morisita ~ mor$Year | mor$RunStr, show.given=FALSE) )
dev.off()
from a text console?
It gives me an error message on the jpeg() command:
Error in X11(..snip..) unable to start device jpeg
In addition: warning message:
unable to open connection to
2007 Aug 16
6
several plots on several pages
Hi
> version
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 2
minor 5.1
year 2007
month 06
day 27
svn rev 42083
language R
version.string R version 2.5.1 (2007-06-27)
I want to create a pdf withe three graphs on a page and with two pages:
2017 Jul 06
0
Plantuml package for R
Hi
I hope I can use this R mailing list for this but it seems appropriate.
I started writing a small package which enables me to create plantuml graphs from within R. It is working and available on GitHub at
https://github.com/rkrug/plantuml
It is at the moment very rudimentary and can either display the generated graph in an R graphic device or save them in a file, but it works nicely (and it
2006 Apr 28
2
fixme:imm:ImmReleaseContext message - what should I do?
Hi
When I run a program I've written with Delphi7, I get several of the
following messages:
fixme:imm:ImmReleaseContext (0x10020, 0x403b9e80): stub
.
.
.
The program works - but is there anything I can do to avoid these messages?
Rainer
--
Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation
Biology (UCT)
Department of Conservation Ecology and Entomology
University of Stellenbosch
2006 May 23
1
SmartInspect Personal crashes kwin under Wine 0.9.13
Hi
System:
SuSE 10.0
KDE Release 3.5.2 Level "a"
Wine 0.9.13
SmartInspect Personal 1.1.0.597
I installed SmartInspect Personal 1.1.0.597 under Wine 0.9.13 and it
works perfect. There is only on problem, but it doesn't influence the
usage - but when it happens, I have to logout (if still possible) and
logon again:
If I click on Help - About, the About window shows (it seems to be
2005 Oct 26
1
install.packages under SuSE 10 behind proxy, R 2.2.0 from source
Hi
I installed R 2.2.0 from source and want to use install.packages but it
doesn't work.
http_proxy is set to http://proxy.sun.ac.za:3128
but it still can't connect to the repository.
The mirror is available, I can connect to it via the internet.
Any help welcome,
Rainer
--
NEW TELEPHONE NUMBER
Tel: +27 - (0)72 808 2975 (w)
Rainer M. Krug, Dipl. Phys. (Germany), MSc
2006 Nov 01
1
Compare linear regressios for significant differences of the slopes
Hi
I have (8 measures * 96 groups) = 768 datasets for which I did linear
regressions using lm().
Now I want to compare the slopes for each of the 8 measures in each of
the 96 groups. As I understand , I can not use
> anova(lm1, ..., lm8)
as the lm1 ... lm8 are based on different datasets.
I also read in previous discussions in this list, that I can see if the
slope +- stddev(slope)