similar to: R script .bat file from Python

Hi, I have a problem with R CMD BATCH, because I created a .bat file to run a script: C:\R\R-2.9.2\bin\R CMD BATCH C:\Scrip_test.R It work perfectly but after 3 lines of script there is a line with a nls() function that cannot be fitted and this end in an error message. I'm not bother by the error message, I just want that the script continue. If I use the R windows GUI the script show the

Hi everybody, I'm trying to create a script that picks a txt file with 2 columns of coordinates (depth and variable1) and automatically tries to fit several polynomial with the function nls(). After that, it creates a list of observed, predict, residuals and other, and then it calculates AIC, RMSD, MAD and R^2. At the end of the script I create a series of vectors with MAD for all

Hi, I have a problem fitting the following Weibull Model to a set of data. The model is this one: a-b*exp(-c*x^d) If I fitted the model with CurveExpert I can find a very nice set of coefficients which create a curve very close to my data, but when I use the nls.lm function in R I can't obtain the same result. My data are these: X Y 15 13 50 13 75 9 90 4 With the commercial

Dear R users, my problem, at the moment, is the following: I need to apply a script to a very big dataset, so I need first to subdivide the dataset into samples and then apply the script to every single sample. Now I tried to solve the problem with these linest: S00001<-data[data$sub==1,1:3] #which divide the dataset in samples based on the number on the column "sub"

AFAIU, 'R CMD check --as-cran' tries to hide any site and user package libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal library is still available for test scripts. Should I revise my assumptions, or is that intentional? The short version. Shouldn't: $ R_LIBS_USER='' Rscript --vanilla -e

Dear All I want to use R, Rscript und r alternately under one common configuration. The problem is that \"r\" can't find the package \"Rmpi\" and other packages whereas \"R\" has no problem to find. $ R --vanilla < mpiHelloWorld.r #!/usr/bin/env r library(Rmpi) # calls MPI_Init rk <- mpi.comm.rank(0) sz <- mpi.comm.size(0) name <-

On Wed, Mar 18, 2020 at 8:04 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > > On 18 March 2020 at 19:19, Henrik Bengtsson wrote: > | AFAIU, 'R CMD check --as-cran' tries to hide any site and user package > | libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary > > What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly

Dear all, I am trying to use multiple version of R unpacked from CRAN deb files. It does work successfully, except for some packages installation, whether Rscript has been used. I have configured alternatives and switch R environments without any problem and can install most of the packages. '====================================================== $ update-alternatives --display R R - auto

Hi, I've a problem with "logon script" parameter: client doesn't run this script and i've no error in samba logs. I'm using samba 3.0.24 (etch) with windows XP SP2 client side. workstation was joined in domain and user login (using roaming profiles) is executed without errors. I used unix2dos tool to transform the script in dos way and if I run the script in widows with

Good day, I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." However, $ export R_LIBS=/users/stgrad/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor"

Hello, the package snow is not working on a windows cluster with MPICH2 and Rmpi. There is an error in makeCluster: launch failed: CreateProcess(/usr/bin/env "RPROG="C:\Programme\R\R-2.5.1\bin\R" "OUT=/dev/null" "R_LIBS=" C:/Programme/R/R-2.5.1/library/snow/RMPInode.sh) on 'cl1' failed, error 3 - Das System kann den angegbenen Pfad nicht finden. I

Hi, Recently, I made an R package that used the C++ library Boost.Thread (http://www.boost.org/doc/libs/1_54_0/doc/html/thread.html) for multithreading. Previously, I have posted a question at stackoverflow (http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-http), and I also asked at rcpp-devel

We have seen problems with a number of packages which use R/Rscript to run R code in configure or makefiles. (a) You must give a full path: there need be no version of R in the path, and if there is it might not be the version/build of R under which package installation is being done. So the general form is to use ${R_HOME}/bin/R to select the right version. And since ${R_HOME} might

Dear R-devel members, recently, I ran into the following error message (R-devel 2018-01-31): 'Rscript' should not be used without a path -- see par. 1.6 of the manual I would like to know more about it, why is it required to run Rscript with a path, and where is that par. 1.6 of the manual. I get this error message during Travis r-devel build of my package for generating makefiles. I

Hi, I am trying to package some code to use with R and wanted to call Rscript from within the Makevars file (I am trying to automate the setting of the location of a third party library depending on what is available / the system the package is being installed on). If I just have a simple Makevars containing PKG_LIBS= -lnag_nag -L/fserver/nagprod/FL22/fll6a22df/lib the package is built

L.S. In this bug report https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14493#c1 it is mentioned that after moving an R installation one should regenerate the Rscript executable. Is there an easy way to do so (after an R installation has been moved)? I have not found any information in the R installation and administration manual. Many thanks in advance for any pointer. Best wishes,

Forum, I've been running some parameter estimation software (UCODE which is maintained by the USGS) that has the capability of running models in parallel on a local network. Each additional processor I can incorporate into the parent-child network helps cut the overall runtime, which is currently on the order of days. When a signal is sent to a child (or slave) processor a series of

Hi, if we have a file called Rscript.R that contains the following, for example: x <- 1:100 outfile = "Rscript.Rout" sink(outfile) print(x) and then we run >> source("Rscript.R") we get an output file called Rscript.Rout - great! Is there an internal variable, something like .Platform, that holds the script name when it is being executed? I would like to use

On UNIX one can use #! notation. It would be nice to be able to do something similar on Windows. This could be done by giving Rscript the capability of skipping over the first few lines. For example, there might be a --skip=n argument or perhaps Rscript would skip over any consecutive leading lines that begin with @ in the R file since that cannot be syntactically correct R but does have

Hi, I would like to get guidance as to how to write code in R that can deal with the following situation: v1 is a vector containing a sequence of numbers (Ex. 1:10) I want to store the sequence of numbers resulting from multiplying the first and the second element in the vector, then the product of the 1st, 2nd and 3rd, then 1st,2nd,3rd and 4th and so forth until all the elements in the