similar to: Migrating R packages from svn/R-Forge to git/Github

[Env: OS: Win Xp; R 2.15.2; IDE: eclipse/StatET] Each time I update my heplots package, I get warnings from R CMD check on R-Forge, * checking sizes of PDF files under ?inst/doc? ... WARNING ?gs+qpdf? made some significant size reductions: compacted ?HE-examples.pdf? from 739Kb to 366Kb and upon submission to CRAN, a message from maintainers: On CRAN now: but again there were warnings

[Env: Win Xp / StatET 2.0 / R 2.15.0] In my heplots package I extended the HE-examples.Rnw vignette under inst/doc. The package passes R CMD check on my machine: * using log directory 'C:/eclipse-3.7/heplots.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: i386-pc-mingw32 (32-bit) ... * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files

CRAN task views are useful, but they seem difficult to write and maintain because the XML format is rather limited (no sectioning) and the <packagelist> must be maintained manually. They are also difficult to read because the generated html and .css used are extremely basic, giving an overly dense page. Are there any markdown-like tools for writing a CTV? Is it possible to apply a

I posted on this topic to r-help, but never got a sufficient answer, so I'm reposting here. [Env: R 2.11.1, Win Xp, using Eclipse/StatET] In a package I'm working on, I want to create as.matrix() and as.array() methods for a particular kind of object (log odds ratios). These are returned in a loddsratio object as the $coefficients component, a vector, but really reflect an underlying

Using R 2.13.1, I am now getting the following NOTE when I run R CMD check on my HistData package * checking for unstated dependencies in examples ... NOTE 'library' or 'require' calls not declared from: gplots sp Under R 2.12.x, I didn't get these notes. I have ~ 25 .Rd files in this package, and AFAICS, every example uses library or require for the functions used;

Hello, since 3 days now I try to get pgfSweave running using Eclipse + StatET. I created a super simple .Rnw file which can be viewed here: http://www.text-upload.com/read.php?id=147992&c=6441045 test.Rnw When I use sweave it works perfectly fine but when I use pgfSweave I get an error. The R output can be viewed here: http://www.text-upload.com/read.php?id=147995&c=3804886 R output

[Env: R 2.11.1, Win Xp, using Eclipse/StatET] In a package I'm working on, I want to create as.matrix() and as.array() methods for a particular kind of object (log odds ratios). These are returned in a loddsratio object as the $coefficients component, a vector, but really reflect an underlying (R-1)x(C-1)xstrata array, whose attributes are contained in other components. I define coef,

In an .Rd example for a package, I want to use data from another package, but avoid loading the entire package and avoid errors/warnings if that other package is not available. If I don't care about loading the other package, I can just do: if (require("ElemStatLearn", quietly=TRUE)) { data(prostate) # rest of example } I'd rather just be able to do something like:

== Summary == * Problem: BibTeX entries extracted from R packages via citation() require too much manual editing to be of general use. * Proposal: Date: fields should be made mandatory in package DESCRIPTION files, perhaps beginning with warnings from R CMD check * Proposal: Package authors should be encouraged to use a (new) Contributors: field in the DESCRIPTION file rather than packing all

[Env: Win XP] I've just upgraded from R 2.12.2 to R 2.13.1. As part of my upgrade process, I typically install some in-development packages from R-Forge that are not on cran. But for the first time, it doesn't work. e.g., > install.packages("p3d", repos="http://R-Forge.R-project.org") trying URL

Hi All, When I teach an intro workshop on R, I've been minimizing "quote confusion" by always using quotes around package names in function calls. For example: install.packages("Hmisc") update.packages("Hmisc") library("Hmisc") citation("Hmisc") search() # displays package names in quotes detach("packages:Hmisc") # just as search

Dear R users. I'm currently making a report with knitr (RStudio) where I would like to plot a googleVis map. However, the map generated is an HTML file which I don't know how to integrate it in my report. So my question is how to include a map generated with googleVis in a PDF created with knitr/sweave. Regards, Phil -- View this message in context:

Hi R List, I get this error using StatET R plugin in Eclipse. >sessionInfo() R version 2.9.0 (2009-04-17) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 I am running Eclipse Platform Version: 3.4.1 Build id: M20080911-1700 on Windows XP My R process

Hi, is it possible to have non-Sweave vignettes(*) in inst/doc/ be listed under 'Downloads' on CRAN package pages? For instance, in my R.rsp package I have a inst/doc/report.pdf (part of the source *.tar.gz) that is not detected/listed. The PDF is not based on a Sweave vignette but an *.tex.rsp vignette that is dynamically created via inst/doc/Makefile. It is listed (*) BTW, can the

Hi, I'm trying to use StatEt IDE for Eclipse as my R editor, but I'm completely lost. I've read all I could find online, made apparently all I had to do (installing rj, configuraing StatEt, etc.) but still cannot make R running. Below is the error log file. Thank you so much for assistance. Matteo !ENTRY de.walware.statet.r.console.ui 1 0 2011-12-05 16:21:51.355 !MESSAGE

Hi I'm trying to make a 3d plot showing a point cloud, the corresponding data ellipse and the principal axes of the ellipse as vectors. library(rgl) data(trees) cov <- cov(trees) mu <- mean(trees) plot3d(trees, type="s", size=0.5, col="blue", cex=2) In this step, an extra box is added. I've tried using box=FALSE, but it has no effect. # how to avoid the

[Using R 2.7.2 on Windows XP] After re-building our heplots package, I've begun to get the following error from sessionInfo(), even though it passes R CMD check and builds without errors: > sessionInfo() Error in x$Priority : $ operator is invalid for atomic vectors In addition: Warning message: In FUN(c("MASS", "heplots", "car", "rgl",

I recently got a RFC on Eclipse and StatET setup from a R-help user, so here it is. Note: there may be slight errors of omission in my directions as I am making these notes after I had a successful install. If you have questions post here. Setup tested with Eclipse 3.4.0 on XP 32-bit and Eclipse 3.4.2 on Vista 32-bit. R 2.9.0 alpha. Installing StatET: 1. Go to Help > Software Updates...

[Environment: WinXp, R 2.9.2, all packages up to date; building under (StatET 0.8, eclipse 3.5.1) or from a batch file] I'm in the process of creating a package, HistData, on R-forge, containing interesting data sets from the history of statistics and data visualization. It contains several examples that use ggplot2, which I've declared as a Suggests: in the DESCRIPTION file. The

Dear all, I have R 3.1.1 installed on Ubuntu 14.04 from the CRAN repo. Days ago I decided to give a try to the Eclipse extension for R (StatET). This extension requires the R packages "rj" and "rj.gd", but these fail to install no matter what. There is a long thread going on at the StatET mail-list, the latest details in this message: