similar to: ggplot2 plotting errorbars.

Hi everyone, I'm very new to R and I like to learn a lot... actually I have a little problem concerning errorbars with xyplot. My data look like run target hemi x 1 1 Nichts Links 0.0007743240 2 2 Nichts Links -0.0008153365 3 1 Target Links -0.0015825950 4 2 Target Links 0.0088743785 5 1 Nichts Rechts 0.0015898995 6 2 Nichts Rechts -0.0011465190 7 1

Hi, Does anyone know how i get rid of the marker point in my error bars? The bars default function (it seems) is to have a dot in the middle of the bar, however i don't want it there. I am using Hmis to draw my errorbars and code is a<-as.vector(tapply(Sporangia,list(Host,Isolate),mean)) b<-as.vector(tapply(Sporangia,list(Host,Isolate),sd)) c<-sqrt(b/36)

I was wondering if anyone could help me with this, simple problem. I am essentially following the example on Hadley's webpage (http://had.co.nz/ggplot2/geom_errorbar.html), but it still doesn't make any sense to me. df <- data.frame(trt = factor(c("intact", "intact", "removed", "removed")), coon = c(0.093, 0.06, 0.057, 0.09), group =

Dear all I have six variables of the average metal concentrations Var1 4.77 Var2 23.5 Var3 5.2 Var4 12.3 Var5 42.1 Var6 121.2 I want to plot them as a barplot with error bars. Could you help me? Cheers Maria [[alternative HTML version deleted]]

I am having a problem creating a scatterplot with error bars using gplot. This is only my second day using R so I am very much a newbie. My x-values (OD600) are: 0.00400000 0.01866667 0.04733333 0.08733333 0.22466667 0.42400000 0.82066667 1.39233333 1.61100000 My y-values (cellconc) are: 2e+06 5e+06 1e+07 2e+07 5e+07 1e+08 2e+08 5e+08 1e+09 And my standard deviations (stdev) are: 0.001154701

Dear list, I am new with ggplot2 and I have spend quiet some time putting together the following code to create the attached plot. However there's still a few things that I'm having trouble with! I would be grateful if someone can tell me how to fix (1) the colour of my bars into grey scales (2) removing the y-axis (species name) on the right figure to avoid duplication, and (3) fix the

Hi everyone (again), before you all start screaming that the reordering of factors has been discusse on several threads and is not particular to ggplot2, hear me out. I can easily reorder my x-axis factor in facet.grid() in ggplot2. What I cannot reorder are the factors represented on the strips. I can see that the graphs are changing, so I am afraid of what it is I am doing. Why is ggplot2

Hi All.. Have a question.. For the following r code testdata <- as.data.frame(t(structure(c( "1/1/04","LV1",3.8,2,87, "2/1/04","LV1",3.2,3,28, "3/1/04","LV1",3.4,3,88, "4/1/04","LV1",3,2,26, "5/1/04","LV1",3.8,2,87, "6/1/04","LV1",3.2,3,28,

Dear all, I want to get a series of boxplots (grouped by two factors) and I want to overlay the original observations and the following code does almost what I want: library(ggplot) ddf <- data.frame(x=factor(rep(LETTERS[1:4], each=30)), y = runif(120,0,10), grp = factor(rep(rep(1:3, 10), 4))) ggplot(ddf, aes(x, y, colour=grp)) + geom_boxplot() + geom_point() Yet the position of the points

Dear all I would like to superpose some smoothing line through boxplot in ggplot > dput(ad) structure(list(konc.f = structure(c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 6L, 6L, 6L, 7L, 7L, 7L, 7L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 6L, 6L, 6L, 7L, 7L, 7L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 4L, 4L, 4L,

Consider the following situation: we have quantified algal concentrations for a variety of species using many samples at each of three years. It seems to make sense to generate a line plot (matplot-like), with each species plotted as a separate line, with the points connected to emphasize the temporal pattern. The problem: lots of overlapping error bars. The question: from both a

Hi, I'm really struggling with barplot I have a data.frame with 3 columns. The first column represents an "incident" type The second column represents a "month" The third column represents a "time" Code for a sample data.frame incidents <- rep(c('a','b','d','e'), each =25) months <- rep(c(1,2), each =10) times

Hi all, I am trying to do a barplot in ggplot2 and want to make sure that the legend order is consistent with the bar order, that is the legend order is orig and match; and the bars are ordered in the same way. It seems to me that I can only control one of them. Any idea? library(ggplot2) df <- data.frame(value = rnorm(20), name = factor(rep(letters[1:10], 2), levels =

I'm looking at ggplot-static\position_dodge.html   For ggplot(diamonds, aes(x=price, fill=cut)) + geom_bar(position="dodge") , is it possible to specify the spacing between the dodge'd bin groupings?    That is, I would like for there to be a small separation (horizontal space) between the "Ideal" and the "Fair" bars on the plot.  That way the reader can get

Hello, I am trying to plot means and standard errors conditioned by a factor, using qplot. I am successful at getting the bar graph I want with a error bar, however I have tried many things and cannot get the bars to change colors. Currently showing as red and blue, but need it to be black and white for publication. Any suggestions please? Using a data set June, which is str:

Hi, I often use plotmeans() from the gplots package to quickly visualize a pattern of change. I would like to be able to plot separate lines for different groups, but the function gives an error when a grouping variable is included in the formula argument. For instance, > require(gplots) > x <- data.frame(Score=rnorm(100), Time=rep(1:10, 10),

Hello, I'm attempting to plot error bars side by side rather than stacked on top of each other with ggplot2. Here is the sample code I am using: #Code #Data spd<-c("s","f","f","s","f","s","s","s","f","f","s","f") r<-c(4.9,3.2,2.1,.2,3.8,6.4,7.5,1.7,3.4,4.1,2.2,5)

Hi With ggplot2 I can very easily create beautiful histograms but I would like to put two histograms on the same plot. The histograms may be over-lapping. When they are overlapping the bars are shown on top of each other (so that the overall height is the sum of the two). Is there any way to get them to display overlapping (with smaller value in front, larger value behind) so that the overall

Hello, I am trying to create a series of boxplots with the following data, three columns, "Day" (1 or 2), "Site" (1-4), and "VO2" (some values missing for some Sites or Days) > CorbulaMR3 Day Site VO2 1 1 1 88.92223 2 1 1 86.17873 3 1 1 61.08950 4 1 1 190.47922 5 1 1 98.65930 6 1 1 121.03549 7 1 1 67.88404 8

Dear all, I'm using zeroinfl() from the pscl-package for zero inflated Poisson regression. I would like to calculate (aproximate) prediction intervals for the fitted values. The package itself does not provide them. Can this be calculated analyticaly? Or do I have to use bootstrap? What I tried until now is to use bootstrap to estimate these intervals. Any comments on the code are welcome.