similar to: ks.test and wilcoxon.test results differ from other stat.packages

Hello, I am making some use of ROC curve analysis. I find much help on the mailing list, and I have used the Area Under the Curve (AUC) functions from the ROC function in the bioconductor project... http://www.bioconductor.org/repository/release1.5/package/Source/ ROC_1.0.13.tar.gz However, I read here... http://www.medcalc.be/manual/mpage06-13b.php "The 95% confidence interval for

Hi! In R 2.14.0dev (R version 2.14.0 Under development (unstable) (2011-04-29 r55692), Windows release (http://cran.r-project.org/bin/windows/base/rdevel.html), the line : options(width=55) in code chunk of an Rnw file has no effect on sweave's output text file. The same thing in 2.13.0 worked. WBR, ALexander Favorov

Hi all, This is a statistics question, I hope someone out there will be able to help me. I have one population (oligonucleotide probes spotted on a Nimblegen array). I measured "parameter one" (intensity after hybridisation) and I have selected a subpopulation of the initial (one tenth of the initial) according to a threshold value. I now measure "parameter two" of

Dear R-users, If you use the exact Wilcoxon test in the coin package, I would like make you aware of that SPSS/StatXact MAY perform a round-off before doing their exact Wilcoxon-Mann-Whitney test (if you ever are unlucky enough not to use R). I have data from two treatments and was surprised to find that SPSS (15 under Windows) and R differed in their p-values (0.167 resp. 0.172). It turns out

Given this example #start code a<-c(0,70,50,100,70,650,1300,6900,1780,4930,1120,700,190,940, 760,100,300,36270,5610,249680,1760,4040,164890,17230,75140,1870,22380,5890,2430) b<-c(0,0,10,30,50,440,1000,140,70,90,60,60,20,90,180,30,90, 3220,490,20790,290,740,5350,940,3910,0,640,850,260) wilcox.test(a, b, paired=FALSE) #sum of rank for first sample sum.rank.a <-

Dear R-List members, I want to check if a set of measurements follows better a gamma or a lognormal distribution (see data below). Using shapiro.test I can test for normality (shapiro.test(log (Lt)). To test for gamma (and normal) distribution I would use ks.test but I need to specify its shape and scale. How should I calculate these values in R? I tried > Lt.fit <- glm(Lt ~ 1,

Well, it seens the virtual plugins is not working correctly or i miss undertood how to configurate it. http://wiki2.dovecot.org/Plugins/Virtual as this wiki says, I should be possible to make an ndeamespace namespace { prefix = virtual/ separator = / location = virtual:~/Maildir/virtual } And in side of ~/Maildir/virtual create virtual folders and inside of those folders create

I think that should be: %post --nochroot -- Sent from the Delta quadrant using Borg technology! Nux! www.nux.ro ----- Original Message ----- > From: "Nico Kadel-Garcia" <nkadel at gmail.com> > To: "Discussion about the virtualization on CentOS" <centos-virt at centos.org> > Sent: Saturday, 25 April, 2015 15:38:49 > Subject: [CentOS-virt] Can we get a

Dear all, I am trying to calculate sample size for a clinical research, on the basis of generalized wilcoxon test or Tarone-Ware test. It seems SAS can do this job using it "POWER" procedure, but SAS is not available to me. I would be very grateful if you could let me know if any R package or other tools which could cope with this problem. Best Regards, Wang [[alternative HTML

Given the following data, and hypothesized median M.0 I've found a method to implement the Wilcoxon signed-rank test. Data: (with one zero difference and tied ranks) x <- c(136, 103, 91, 122, 96, 145, 140, 138, 126, 120, 99, 125, 91,142, 119, 137) M.0 <- 119 > library(exactRankTests) Package ?exactRankTests? is no longer under development. Please consider using package ?coin?

Hi! I need to run a wilcoxon (Mann-whitly, in fact) test with bonferroni correction, as I am running 10 consecutive wilcoxon test not independent, and I know that bonferroni will partially correct for this problem, but I have no idea how to do it with R, I have been looking in the archive but couldn't understand how to do it. The format I am using at the moment is r4_o <- [1]

Hi, R allows me to run a one sample Wilcoxon test like this: wilcox.test(c(1,3.5,2.1,4,1.5,5), mu=2, exact=TRUE) The function 'wilcoxsign_test' from the package 'coin' should (I suppose) be able to calculate exact p values even if there are ties in the ranks. However, I couldn't find information on how to run a one sample test using 'wilcoxsign_test' like in the

hello, i'm searching the r-coding to plot wilcoxon signed test. i already searched everywhere for a month, but i didn't found it. Could anyone help me, please. [[alternative HTML version deleted]]

Dear All, is there a stratified version of the Wilcoxon test (also known as van Elteren test) available in R? I could find it in the survdiff function of the survival package for censored data. I think, it should be possible to use this function creating a dummy censoring indicator and setting it to not censored, but may be there is a better way to perform the test. Thanks, Heinz T??chler

Dear Stefan I need to apply a Mann Whitney test to my data, by applying a bootstrap, in R. Loonkig for an answer in internet I found your question to the R mailing list but I have not found the answer to your question. Please, could you help me? thank you very much in advance. Best regards Luciana

How does R compute the p-value in the Wilcoxon Rank Sum Test? If I have the test statistics, can I get the p-value using the function pwilcox? Thanks -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the

Hi I am applying the wilcoxon paired signed rank test to many sub-groups of a data frame using by() and wilcox.test, and sometimes the test uses continuity correction and sometimes it doesn't. What I want to know is: 1) what is continuity correction? The docs say: correct: a logical indicating whether to apply continuity correction in the normal approximation for the p-value.

Hello there, I would like to do a Wilcoxon matched pairs signed rank sum test in R and tried the function wilcoxon.test. Is it in the "base" library? If not, please let me know which library it is in. Thank you in advance for your help Lisa Wang Biostatistician Princess Margaret Hospital Toronto, Ca

An earlier post had posed the question: "Does anybody know what is relation between 'T' value calculated by 'wilcox_test' function (coin package) and more common 'W' value?" I found the question interesting and ran the commands in R and SPSS. The W reported by R did not seem to correspond to either Mann-Whitney U, Wilcoxon W or the Z which I have more