similar to: Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

Hi, I have a dataset with x and y coordinates and in each point I have an identity of point, in some cases I can have more then one identity by point. My dataset is something like this: > x <- rep(c(1:4),4) > y <- rep(c(1:4),c(4,4,4,4)) > area1 <- sample(factor(rep(c("a","b","c","d"),4))) > area2 <-

I'm reading Torgo (2010) *Data Mining with R*<http://www.liaad.up.pt/~ltorgo/DataMiningWithR/code.html>in preparation for a class I'll be teaching next quarter. Here's an example that is very non-functional. > pH <- c(4.5,7,7.3,8.2,6.3) > names(pH) <- c('area1','area2','mud','dam','middle') > pH area1 area2 mud dam

Hi there, I am not getting anywhere near a solution, so here is my question. I have searched the archives and didn't find a solution, but maybe my search didn't use the right words. So here it is: I have a dataframe with the following structure factor1 factor2 value In the (rather large) dataset I have to work on, there are some factor combinations missing, e.g. factor1 <-

My data frame looks like: SightingID PA1 PA2 PlotID InOverlap Area1 2001 1 -99 392 Y 0.22 2002 1 -99 388 Y 0.253 2008 1 NA 104 N 0.344 2010 1 NA 71 N 0.185 2012 1 NA 61 N 0.166 2013 1 NA 61 N 0.227 2014 1 NA 62

Dear laurent, > But there are lots of commands I found in R docs which are "not found", > such as getTable. Deprecated (I successfully used dbListTables) or do I > simply miss a package ? >From RMySQL\NEWS: * added (almost) trivial convenience RS-DBI functions getTable(), assignTable(), existsTable(), and removeTable(). They all mimic the corresponding R/S get(),

Hi there, Could someone help me with the following programming problem..? I have written a function that works for my intended purpose, but it is quite closely tied to a particular dataframe and the names of the variables in this dataframe. However, I'd like to use the same function for different dataframes and variables. My problem is that I'm not quite sure how to tell my function in

Hello All, I have a data.frame with this structure: m <- matrix(sample(c(rep('yes', 10, replace = TRUE), rep('no', 10, replace = TRUE), NA), 500, replace = TRUE), nrow = 100, ncol = 5) colnames(m) <- colnames(m, do.NULL = FALSE, prefix = "col") m <- as.data.frame(m) I need to generate a Venn diagram from this data.frame, displaying the various intersections of

I was wondering if anyone could help me figure out how to make a Venn diagram in R where the circles are scaled to the size of each dataset. I have looked at the information for venn (in gplots) and vennDiagram (in limma) and I cannot seem to figure out what parameter to change. I have looked this up online and do not seem to be seeing anyone else who has posted this question or the answer to it

Dear all, I am trying to merge two data frames based on a common column but for this common column both data frame do not have the same length and associated information. I checked previous exemples in the list but was not able to apply them in my case... Is someone know how to do that? Below is my code with the expected result: # data frame 1 Id1 <- c(1,1,1,2,2,2,3,3,3) Habit1 <-

Hello, I am a total beginner with ?R? and found a package ?venn? to create a venn diagram. The problem is, I cannot create the vectors required for the diagram. The manual say: "R> venn(accession, libname, main = "All samples") where accession was a vector containing the codes identifying the RNA sequences, and libname was a vector containing the codes identifying the

Hi all, I am trying to plot a venn diagram using vennDiagram in limma package, but I have no idea how to have it colorful such as the color one created by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi. Any one has any advice? Thanks, D.

Hi there, Is there a way to control the circle diameter in venn.diagram function of VennDiagram package? Thanks Mike [[alternative HTML version deleted]]

I'm using area() to evaluate the area under 2 functions (defined using approxfun()) and the result is in contradiction with visual inspection (please see: http://sites.google.com/site/eospansite/dummy/problem_area.jpg ) The area under the red curve should be larger than the one under the black curve, but I'm geting the opposite result using area(). This is what I'm doing:

Note: I don't know if this is a problem withe I20 drivers or Rsync so I'm submitting to both the Kernel Bugzilla and the Rsync mailing list. I couldn't find a bugzilla for Rsync. I hope this was the correct way to submit this issue. Distribution: Debian Hardware Environment: Intel 850MV Mother board, Pentium 4 processor, 1Gig of RAM, Adaptec 2400A RAID Controler. Both the

Dear All I would really appreciate some help with a script which a colleague wrote for me (attached), but I am having problems running (and have not been able to contact my colleague). The script is designed to compare the area of suitable habitat in binary projections of a large number of species current and future distributions, and create an excel file detailing the total area suitable in the

Hello my name is Piercarlo and I've discovered a bug in smbd_audit when I trace a Samba 2.2.7 or 2.2.7a on red hat 7.3 -the error exist on the redhat 2.4.18-17kernel ,on the original rh73 2.4.18-3 kernel and on the standard linus kernel (I tried on 2.4.20)-->these kernels are all the kernels that I tried. This error appear when samba is configured as pdc with the roaming of the users

Hi there ! I've got 7 Samples that may contain 29 differents kinds of material.... every line below corresponds to a differente kind of material, example: Sample 1, 2,3,5 and 6 has material 1 .... So I want to know how can I do a Venn Diagram with the data below .... ps ( it was generated by a csv, where every line is sep with (";")) Can someone helps me ? thanks csv file :

I'm trying to plot Venn diagrams with more than 3 sets (5 actually) in order to describe graphically the genetic variation between populations. I tried the limma library but realised it can only plot 3 sets. Is there any solution? Of course I could plot the chart manually but it'll take too long (have other datasets)..... One of my dataset is given below. THanks for any advice. j

Hello, Even though the documentation says that it is possible to have a scaled Euler diagram for three categories, this fails to happen. All of the circles are the same size. My commands are : library(VennDiagram) A <- 1:10 B <- 9:18 C <- 15:500 venn.diagram(list(NameOne=A, NameTwo=B, NameThree=C), "example.tiff", euler.d = TRUE, scaled = TRUE, fill = c("red",

I used the supersmoother function in the modreg package as follows: super <- supsmu(ilogemp,award) Then I decided that I might want additional explanatory variables (other than ilogemp) in my model. The ppr function in modreg seemed a logical extension of supsmu from univariate to multidimensional explanatory variables. As a "check" I ran the following: pprest <-