similar to: How to change R file in stats?

Dear I am using the 'as.dendrogram' function from the 'stats' library to convert from an hclust object to a dendrogram with a dataset of size ~30000 (an example code is below). I need the dendrogram structure to use the "dendrapply" and "attributes" functions and to access the child nodes, I do not need any of the plot properties. The problem is that it

I want to classify bipolar neurons in human cochleas and have data of the following structure: Vol_Nuc Vol_Soma 1 186.23 731.96 2 204.58 4370.96 3 539.98 7344.86 4 477.71 6939.28 5 421.22 5588.53 6 276.61 1017.05 7 392.28 6392.32 8 424.43 6190.13 9 256.41 3850.51 10 249.17 3118.14 11 276.97 3037.29 12 295.30 3703.76 13 314.43 5265.97 14 301.15 5781.73 I

Hi all, This is the first time I'm writing to R-devel, and this time I'm just asking for the purpose for a certain line of code in stats::as.hclust.dendrogram, which comes up as I'm trying to fix dendextend. The line in question is at line 128 of dendrogram.R in R-3.3.3, at stats::as.hclust.dendrogram: stopifnot(length(s) == 2L, all( vapply(s, is.integer, NA) )) Is there any

Hi All, I've gotten a number of reports from users about gplots::heatmap.2 generating 'node stack overflow' errors. As it turns out, these errors originate in stats:::plotNode, and are triggered when it is passed a dendrogram that is too deeply nested. While increasing the stack size (which is a compile-time option for byte coded functions) can allow a particular instance to

Hello all, I was trying to load a .r file using source() and load() functions. Although I could be able to load the codes (mainly few user defined functions) written in that .r. file correctly, however getting following error: > source("D:/Book Code.r") Error in sys.call(sys.parent()) : node stack overflow > load("D:/Book Code.r") Error: bad restore file magic number

Dear All I am a stats newbie and have a basic stats question; i have y as dependent variable and x1 to x5 as dependent variable. I need to know which variables x1 to x5 are actually affecting y. How do I find out? can an example be given which makes things clear (if possible)? Thanks Parth

It was recently pointed out on the lists that the S-PLUS Trellis suite has a function called reorder.factor that's useful in getting useful ordering of factors for graphs. I happily went ahead and implemented it, but it turns out that R (not S-PLUS) has a generic called reorder (with a method for "dendrogram"). Naturally, this causes R to think I'm defining a method for

Hello, I would like to use push in qmail+dovecot environments. Can someone tell me which components should I use to enable this feature for mobile devices? Thanks. -Ibrahim.

So finally I got the net vampire to work. I had to roll back to commit 62e0a74 bypassing all the updates done by mdw at samba.org for now. Now the replication PDC1 is the first domain controller created by provision PDC2 is the second is the second domain controller created by net vampire on PDC1 I added user using "net newuser testuser1" in few seconds it appeared on PDC2 using the

I'm trying to get MSSQL Query analyzer to work it loads up i can enter the sql server name and user name and password. in the sql client utility it is setup for tcpip with an alias for the server name and the ip address. it tries to connect then comes back with an error: [Microsoft][ODBC SQL SERVER DRIVER][TCP?IP SOCKET]General network error odbc32 is native wsock32 is native winsock is

Hello Experts, I have a tree of categories in this category object there is a property called type. the root categories have no type but the children have. so how I can get all the roots with filled in children that have category type = ''B'' for instance. I tried to run Category.roots then delete children With a category not equal to ''B'' but this causes a major

Hi all, May i know does R has packages or code to run "Bayesian Relative Survival Analysis"? I have look through Bayesian Survival Analysis(2001) by Joseph George Ibrahim<http://www.google.com/search?tbo=p&tbm=bks&q=inauthor:%22Joseph+George+Ibrahim%22>, Ming-Hui Chen<http://www.google.com/search?tbo=p&tbm=bks&q=inauthor:%22Ming-Hui+Chen%22>, Debajyoti

Hi When I give the command: > heatmap.2(as.matrix(d),Rowv=as.dendrogram(hc.gene),Colv=FALSE,scale="row ",trace="none",col=greenred.colors(79)) The resulting heatmap has re-ordered my columns! This is time-course data, and I don't want my columns re-ordered! Note from the help: Rowv: determines if and how the _row_ dendrogram should be reordered.

Hi all. I created a smb-share on my el6 for all windows-pcs in my home-network (I'm the only Linux-User in my family) for sharing all the stuff we have, like music and videos and documents. The share will be shown on the other pcs (Windows XP), but they can't open it. The error-message ist "Share not found" on our preferred language of course! SELINUX-CONFIG sh-4.1# cat

Dear useRs, I am working on a project involving the clustering of a large dataset. I need to extract specific sub-clusters from the parent dendrogram for further analysis. The data is too large for the use of convenient tools such as identify.clust (it selects the specific group of interest on a graph), so alternatively I have saved the plot as a large image file so that it can be printed or

Hi, I'm trying to build dendrograms to pass to heatmap(). The dendrograms I build plot properly, but when I pass them to heatmap() I get the error message "row dendrogram ordering gave index of wrong length" (see output log below). I looked in the code of heatmap() and saw that the error was due to a NULL return value from order.dendrogram(), which in turn got a NULL return value

Hi, I want to add a feature to the fetch command in IMAP, by enabling it to return the save date, when I request the SAVEDATE parameter. I want to use this for my webmail application, so I can show the users the deleted date when they are viewing the Trash folder. I was able to put it directly into the code (patch attached), but I was wondering if there is a way to put it as a plugin instead.

Hi, hres <- hclust(smatr,method="single") hresd<-as.dendrogram(hres) as.dendrogram(hres) `dendrogram' with 2 branches and 380 members total, at height 2514.513 plot(hresd,leaflab="none") #<-error here. #the plotted dendrogram is incomplete. The x axis is not drawn. #The interested reader can download the save(hresd,file="hres.rda") #from the

Hi When I use plot(hclust(dist..)...)...) etc to create a dendrogram of a hierarchial cluster analysis, I end up with a vertical tree. What do I need to do to get a horizontal tree? Also, my users are used to seeing trees who's leaves all "end" at the same place (eg. Like in minitab). Is this possible in R? Thanks Mick Michael Watson Head of Informatics Institute for Animal

Hi all, ok, i know i can cut a dendrogram, which i did. all i get is three objects that a dendrograms itself. for example: myd$upper, myd$lower[[1]], myd$lower[[2]] and so on. of course i can plot them seperately now. but the lower parts still have hundreds of branches. i?ll need a 30 " widescreen to watch the whole picture. what i?d like to is group the lower branches , so that i get a