similar to: error installing KEGGSOAP

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hi R HELP, I consider the 2^3 factorial experiment described at page 177 of the book Statistics for Experimenters: Design, Innovation, and Discovery by George E. P. Box, J. Stuart Hunter, William G. Hunter (BHH2). This example use the following data in file BHH2-Data/tab0502.dat at ftp://ftp.wiley.com/ in /sci_tech_med/statistics_experimenters/BHH2-Data.zip run T C K y 1 1 -1 -1 -1 60 2

Dear all, I just noticed that the 0.9 update for FrF2 did not work out for Mac OS due to an error in an example that ran without error on all other platforms. I do not find any reason for this. In the past, umlauts or tab characters have sometimes been an issue, but I didn't find any of these. The function definition is FrF2(nruns = NULL, nfactors = NULL, factor.names = if

Dear developeRs, I encounter the following problem: in the current version of my package FrF2, certain calls to a functioni do not work when package combinat is loaded, because function combn from combinat masks the function from utils that my package uses. I tried to solve this issue by importing function combn into the namespace of FrF2; I don't need to export it, I just want to use it

CRAN (and crantastic) updates this week New packages ------------ Updated packages ---------------- New reviews ----------- This email provided as a service for the R community by http://crantastic.org. Like it? Hate it? Please let us know: cranatic at gmail.com.

Hi I'm trying to use a bioconductor package (KEGGSOAP) which relies on Rcurl and SSOAP. As an example, a function exists: > list.organisms function () { orgs <- matrix(unlist(.SOAP(KEGGserver, "list_organisms", "", action = KEGGaction, xmlns = KEGGxmlns), use.names = FALSE), ncol = 2, byrow = TRUE) temp <- orgs[, 2] names(temp)

Dear all, I am working on a function formula.design that should automatically generate reasonable lm formulae for a number of different designs. All works well as long as all variables used are columns of the design data frame. For one function, I would like to incorporate a dummy variable for center points that is not a column of the design. Without this function, it would work like this (at

Dear developeRs, my package FrF2.catlg128 holds large catalogues and is supposed to gain additional ones. All the catalogues are intended for the user. So far, the catalogues were stored in the data directory, and LazyData was "no". I understand that this is not considered wise any more (if it ever was), so that I want to change to LazyData "yes" with the next release

Hello R experts: I need a developer version of a Bioconductor library. > sessionInfo() R version 3.4.2 (2017-09-28) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 When I try to useDevel it fails. I've removed packages and again loaded but I get the same error message. remove.packages("BiocInstaller")

Hi Everyone, I found the doe.base package and the FrF2 package to do nice experimental planning and I'm very happy about this tool I was looking for such a long time. But I still try to find out how to add center points to a full factorial design. The FrF2-package has a center point option but is just supporting fractional designs? Is there a possibility to have center points within the

Thank you Michael Dewey. Can you please send me the email id for Bioconductor. regards Pijush On Fri, Dec 29, 2017 at 5:20 PM, Michael Dewey <lists at dewey.myzen.co.uk> wrote: > Dear Pijush > > You might do better to ask on the Bioconductor list as IRanges does not > seem to be on CRAN so I deduce it is a Bioconductor package too. > > Michael > > > On

Hi I am trying to install a package (bioconductor) but every time I try to install it I get this message: source("http://bioconductor.org/biocLite.R") Warning in install.packages("BiocInstaller", repos = a["BioCsoft", "URL"]) : 'lib = "C:/Program Files/R/R-3.0.0/library"' is not writable Error in

I've asked a question in the BioConductor list about package management. My solution depends on your answer to the following question. Are installed R packages "relocatable"? I mean relocatable in the same sense that files in a RedHat RPM file might be "relocatable" after compiling (http://www.rpm.org/max-rpm/ch-rpm-reloc.html). This allows one to build a package as the

CRAN (and crantastic) updates this week New packages ------------ * bdoc (1.0) Michael Anderson http://crantastic.org/packages/bdoc This package contains a function that will classify DNA barcodes as well as a few test and reference data sets. * bdsmatrix (1.0) Terry Therneau http://crantastic.org/packages/bdsmatrix This is a special case of sparse matrices, used by coxme and

To whom it may concern. As I would like to analyse some array data I was keen on downloading the lumi package that depends obviously on hdrcde that is not available for r 2.12.1. I did not find instructions to solve or circumvent this problem. Installing hdrcde by hand did not work either. It was not detected by > (.packages(all.available=TRUE)) if installed in the R library. Thanks Hermann

L.S. We would like to generate fractional design for a conjoint analysis. For example we would like to reduce 2x2x2x2x3 --> 12-16 profiles. We tried the R-package "conjoint" and we found an article which describes how to make fractional design for these kinds of studies with Algdesign: http://tolstoy.newcastle.edu.au/R/e10/help/att-8876/DCE_with_R.pdf However, the generated

Hello, Can anyone point me to an online tutorial or book containing the easiest way to do ANOVA over the result data from a 2^k*r experiment. It is not clear to me if I can pass the raw data corresponding to each experiment or just the summarized data i.e. mean, sse, std, etc. I would like to get the: - box plot showing the effect for the different factors and levels - plot showing whether there

Sorry to ask a (probably) dumb question, but I am trying to install XML package on Windows XP, R 2.0.1, and I get the error: "This application has failed to start because libxml2.dll was not found. Re-installing the application may fix this problem" > library(XML) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This

HI, I would like to update my DESeq package version on R-2-14 using bioclite() and get this message, could somebody help please? > biocLite("DESeq") BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'DESeq' Installing package(s) into ?/nfs/team82/nac/R-modules? (as ?lib? is unspecified) trying URL