similar to: R CMD check not reading R_LIBS from ~/.R/check.Renviron

Dear List, I'm having considerable trouble setting up my environment (Linux, Fedora 16, Bash) to build and check packages under R Under Development (r61660). I'm doing this to better get a handle on difference in the output from running checks on examples in one of my packages. Note I compiled R Under Development myself The problem I am now having is whenever I try to build my analogue

Hi all, I'm trying to check a package using R CMD check --as-cran <package>. When I do so, the check fails upon not finding the dependencies which I have installed in a non-standard location. Per the manual, I created ~/.R/check.Renviron : $ cat ~/.R/check.Renviron R_LIBS=/usr/lib64/R/library:/usr/lib64/R/var R_LIBS_SITE=/usr/lib64/R/library:/usr/lib64/R/var No luck. I tried

Hi! Where to set R_LIBS? I have .Renviron with the line. R_LIBS=/package/R/R-1.5.0/linux/lib/R/library/;/home/wolski/Rpack/ in my home directory but cant access any library stored in the /home/wolski/Rpack/? Eryk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

Hi, I am interested in customizing the installation of R. I have gone through the ?R Installation and Administration? manual. But some of the stuff is not clear to me and I would like to get clarifications on the following points (for a Windows installation with R_HOME=C:\\R\\R-2.9.1 ) : 1. I understand that I need to create a file, .Renviron with the following path : R_HOME\\etc\\.Renviron where

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

Hi, R people. I'm shy reporting this, as a bug in this area sounds very unlikely. Did I make my tests wrongly? I'm still flaky at all this. Let me dare nevertheless, who knows, just in case... Please don't kill me! :-) Not so long ago, I wrote to this list: > (For now, [the library code] works only for me when I do _not_ use `-l > MY/OWN/LIBDIR' at `R CMD INSTALL'

Dear Dirk, Dear Johannes, Thanks for helping, I could solve the problem. By reading your posts, I got a bit of the impression that questions beyond the 'standard installation' process are not really welcome on R-SIG-Debian. If this is the case, I'm sorry for my post. I wasn't aware of this, but Dirk makes it clear why on

Hello, I'm adding a private library tree in my home directory by adding this to my ~/.Renviron: R_LIBS="~/R/library:${R_LIBS}" so that once in R: R> cat(Sys.getenv("R_LIBS"), "\n") ~/R/library:/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library Is this the best way to proceed? Cheers, -- Sebastian P. Luque

Hi there, I'm in the following directory: ~/Documents/Rstuff/diceFiles/dice_1.1 The directory "dice" is in this directory, with all the usual build files (DESCRIPTION, NAMESPACE, etc). I'm trying to run the following command: R CMD check dice (where "dice" is the name of the package I'm checking), and I get the following: * checking package dependencies ...

Martin, I am aware of --vanilla; I use it myself for some testing. In this case R_LIBS_USER was set externally (part of my login) and does not involve any of the R scripts. That means it is inherited by any subprocess. For example: tmt1495% R --vanilla --no-environ R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" Copyright (C) 2016 The R Foundation for Statistical Computing

Thanks to Peter Dalgaard , I have made some decent progress as far as getting R to work in linux . I just want to set my environment variable R_LIBS to /u/etlfs/dev/users/leedsmar/R/library ( in linux ) so that I can install specific packages. Does anyone know the syntax and in which file I set this variable ( .Rprofile etc ). I've looked in the installation manual ( i'm mainly on pg 14

On Thu, Apr 2, 2015 at 5:49 AM, Johannes Ranke <jranke at uni-bremen.de> wrote: > Hi Marius, > > thanks for your reply. > >> > So maybe you could modify your instructions to the case where someone >> > wants to have R-devel in addition to the released R version, if that is >> > what you are aiming at? I could then add it to the README for Debian on

Hi all, I added the following line on the "Renviron.site" file: R_LIBS=C:\Program Files (x86)\R\library And when I start R and run: .libPaths() I don't see this path. On windows XP it worked for me. I am now using windoes 7 (64 bit) with R 32. Is there a reason this shouldn't work? Thanks, Tal ----------------Contact

On Tue, Mar 31, 2015 at 2:05 AM, Johannes Ranke <jranke at uni-bremen.de> wrote: > Dear Marius, > > thanks for sharing your thoughts on this. I am not very happy that you provide > instructions to install R 3.1.3 from sources when binaries are already > provided on CRAN. Dear Johannes, ... no one in his/her clear mind would go that way unless necessary. I have given reasons

Doing help("R_LIBS") brings up a help file (the same one as help(library)), but the help file doesn't mention R_LIBS. It does have a link to .libPaths, which does document R_LIBS. The quickest fix would be for help("R_LIBS") to bring up the .libPaths help file. --please do not edit the information below-- Version: platform = i386-pc-mingw32 arch = i386 os = mingw32

Dear R-devel: i have noticed a little wrinkle in R packaging for RPM systems and have communicated with the package maintainer at RedHat Tom Callaway (see far below). Here is the question: Where does R Core Team want packagers to fiddle around with R library paths? Currently, the RPM Spec file used for EPEL's R (For Fedora/Redhat/Centos,etc) adds a line in R_HOME/etc/Renviron like this:

Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # * installing to library ?/Users/hadley/R? # ERROR: dependency ?ascii? is not available for package ?rapport? But: ls

On Thu, 2017-02-09 at 09:52 -0600, Therneau, Terry M., Ph.D. wrote: > Martin, > ? I am aware of --vanilla; I use it myself for some testing.??In this case R_LIBS_USER was? > set externally (part of my login) and does not involve any of the R scripts.??That means? > it is inherited by any subprocess.??For example: > > tmt1495% R --vanilla --no-environ > > R version 3.3.1

Hi, I keep getting the error message and a pop-up window for selecting CRAN mirror server from Rgui.exe after setting the R_Libs Warning in install.packages(necessary[!installed], dep = T) : argument 'lib' is missing: using 'D:/Program Files/R/R-2.8.0.libs' --- Please select a CRAN mirror for use in this session --- Error in contrib.url(repos, type) : I set the command