Displaying 20 results from an estimated 140 matches similar to: "Irreproducible exception in R extension"
2012 Oct 19
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago (in 2008, using R 2.7.x, I believe) I noted that
using the configure switch --enable-R-shlib when buildig R made
configure ignore any specified external LAPACK library and use the
internal one insted. I asked why, and was told it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run configure like this:
2012 Sep 21
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago I noted that using the configure switch
--enable-R-shlib when buildig R made configure ignore any specified
external LAPACK library (I cannot recall if also the BLAS specification
was ignored) and use the internal one insted. I asked why, and was told
it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run
2011 Nov 03
4
How to used MKL (not revolution-mkl) with Debian packages
Hi folks,
if you want to use MKL (the fast BLAS I have tested on my Thinkpad T410)
with the R 2.14.0 built as Debian/Ubuntu packages available on CRAN mirror,
the following tricks may works for without some known side-effects (likes
openmp breaking issues), you may try to build your own libblas.so.3gf.0
with following command:
$ gfortran -L/opt/intel/lib/intel64 -liomp5
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> > After a few days of reading and headache, I finally gave a try at
> > building R from source with Intel MKL and ICC. Documentation and posts
> > on this topic are rather incomplete, sometime fantasist et do not give
> >
2017 Apr 20
2
Intel MKL compiling issue
Dear R-developers,
I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows,
./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib
I have used,
export MKL_NUM_THREADS=15
export
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at
building R from source with Intel MKL and ICC. Documentation and posts
on this topic are rather incomplete, sometime fantasist et do not give
much explanations about configure options.
As I am not sure if mine is correct, I would appreciate some advices and hints.
OS: Fedora 22
parallel_studio_xe_2016
Hardware : 8 Thread(s) per
2012 Aug 21
1
make check fails two tests on RHEL 6 build
I am installing R 2.15.1 onto RHEL 6, using gcc 4.7.0 with Intel MKL
10.3.7 and the following environment:
export BLAS_LIBS="-Wl,--start-group
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_gf_lp64.a
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_sequential.a
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_core.a -Wl,--end-group
-lpthread"
export LAPACK_LIBS="-Wl,--start-group
2017 Apr 20
1
Intel MKL compiling issue
On our Scientific Linux 6, there is
gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
and later version (a symbolic at HOME to the system directory),
export MKL=/home/jhz22/11.3.3.210/mkl
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \
--enable-R-shlib --with-lapack \
2015 Sep 30
1
Build R with MKL and ICC
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote:
> Hi Arnaud --
>
> I'm glad it's working for you. I'm not sure I understand your final
> answer. Are you saying that the version I posted worked for you as
> given, or that you had to remove some of the other options?
I say it works perfectly when using the single dynamic library
(lmkl_rt):
2014 Feb 06
0
Oplock break failed for file XXX-- replying anyway?
Hi
I have problems with Samba and hope some of you can help me. Below if I
have add the error messages that are relevant.
[root at roskilde mosek]# emacs /var/log/samba/log.172.16.0.108
File Edit Options Buffers Tools Help
[2014/02/06 10:18:29.562405, 0] smbd/oplock.c:330(oplock_timeout_handler)
Oplock break failed for file
windows/intel/Composer-XE-2013.198/Documentation/csupport.txt --
2008 Nov 20
0
[PATCH 2/2][VTD] ats support for Intel64 with VT-d
This patch turns on ATS in VT-d context entries and devices with ATS capability. It also contain minor code clean up.
Signed-off-by: Allen Kay <allen.m.kay@intel.com>
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2015 Sep 07
2
Build R with MKL and ICC
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote:
> On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> >> > After a few days of reading and headache, I finally gave a try at
2015 Sep 02
0
Build R with MKL and ICC
On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is
2015 Sep 05
0
Build R with MKL and ICC
On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
>> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
>> > After a few days of reading and headache, I finally gave a try at
>> > building R from source with Intel MKL and ICC. Documentation
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
Hello,
I compiled R-2.15.2 with linux intel compilers (see below).
when I execute some R code on a // 4 proc x 4 cores // server
(export MKL_NUM_THREADS = 16)
very often I have the situations where only one processor (4 cores) is
active instead of 4 (16 cores) !
do you know this fact depends on what ?
thank you !
P.S.
many functions of R are single-threaded,
is there a simple way to make them
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote:
>
> As a short and simple approach, I just compiled the current R release
> on Ubuntu with ICC and MKL using just this:
>
> $ tar -xzf R-3.2.2.tar.gz
> $ cd R-3.2.2
> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g
> -O3 -xHost" ./configure
2015 Jan 23
3
[LLVMdev] X86TarIgetLowering::LowerToBT
I’ll be happy to run it for you. Do you want Intel64, x86 or both? The Intel compiler doesn’t have a –Oz option. It has –Os and –O[123].
Also, FWIW, one of the Intel compiler experts on BT will comment on this thread, and on our rules for BT usage later this afternoon.
Kevin B. Smith
From: llvmdev-bounces at cs.uiuc.edu [mailto:llvmdev-bounces at cs.uiuc.edu] On Behalf Of Chris Sears
Sent:
2019 Aug 07
2
Adding nops after ret
Hi,
Is is possible via clang plugin (clang configuration) to add 4 nops after
ret instruction on Intel64?
Thanks,
Alexei
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2017 Apr 20
0
Intel MKL compiling issue
There is nothing here indicating any kind of error, so no way to give
any insights ....
And please do follow the posting guide, including not posting HTML.
FWIW, I have tested R 3.4.0 RC (sic) with MKL 11.3, which is later than
your 2013 ... (on x86_64 Fedora 24).
On 20/04/2017 10:39, jing hua zhao wrote:
> Dear R-developers,
>
>
> I would appreciate any insights over compiling R
2007 Jul 10
5
[PATCH] vmwrite high 32 bits of 64bit VMCS fields when in PAE mode
vmwrite higher 32 bits of 64bit VMCS fields when in PAE mode.
Signed-off-by: Xin Li <xin.b.li@intel.com>
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