similar to: Help reading matrixmarket files

Hola como andan? estuve leyendo un poco la documentacion de la libreria BigMemory y no me quedan claro algunas cosas, le planteo mi problema, tengo un matriz en disco que pesa 2gb con coeficientes float´s, solo numeros, y tengo que hallar la descomposicion en valores singulares de esta matriz, basicamente la pregunta seria: como hacer para leer la matriz, calcular su DVS y como escribirla en

Hi I'm trying to use ouch's hansen and brown functions but I get the error: > brown(logflatnodes,archotreeouch) Error in backsolve(l, x, k = k, upper.tri = upper.tri, transpose = transpose) : NA/NaN/Inf in foreign function call (arg 1) and with hansen also: Error in optim(par = c(sqrt.alpha, sigma), fn = function(par) { : function cannot be evaluated at initial parameters

Hola erreros Estoy rizando el rizo con esto de las matrices sparse y he encontrado la forma de hacerlo en python, que va rapidísimo. Por tanto tengo una matriz sparse en un objeto python con esta info: <138493x26744 sparse matrix of type '<type 'numpy.int64'> Quiero hacer lo mismo con R pero me he topado con la lentitud de los bucles para rellenar la sparse (también por mi

For example, if I call "library(spam)", I would get messages like this Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17). Type demo( spam) for some demos, help( Spam) for an overview of this package. Help for individual functions is optained by adding the suffix '.spam' to the function name, e.g. 'help(chol.spam)'. Attaching package: ?spam? The

I have a situation in R where I would like to find any x (if one exists) that solves the linear system of equations Ax = b, where A is square, sparse, and singular, and b is a vector. Here is some code that mimics my issue with a relatively simple A and b, along with three other methods of solving this system that I found online, two of which give me an error and one of which succeeds on the

I am getting the above warning following loading of Geneland 3.1.5 on unix , while a simple plot sends output to the pdf file ( see attached code) no output results from Geneland functions, resulting in empty pdf files > library (Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package 'spam' is loaded. Spam version

Hi, I''ve got a real head-scratcher. I''ve got a standard Ajax form using form_remote_tag, which calls a controller action which adds a comment and then sends back some JS via RJS which updates a few items on the page. It did work fine but (and I''ve no idea what has happened) now it doesn''t. It calls the controller action but gets an empty response back and

Hi, I'm finding that readMM() cannot read a file written with writeMM(). Example: library(Matrix) a = Matrix(c(1,0,3,0,0,5), 10, 10) a = as(a, "CsparseMatrix") writeMM(a, "kk.mm") b = readMM("kk.mm") Error in validObject(.Object) : invalid class "dgTMatrix" object: all row indices must be between 0 and nrow-1 Thoughts? Thanks, -Jose -- Jose

> On 20 Apr 2016, at 13:22, A A via R-help <r-help at r-project.org> wrote: > > > > > I have a situation in R where I would like to find any x (if one exists) that solves the linear system of equations Ax = b, where A is square, sparse, and singular, and b is a vector. Here is some code that mimics my issue with a relatively simple A and b, along with three other

This is not a solution but your lsfit attempt #Error in lsfit(A, b) : only 3 cases, but 4 variables lsfit(A,b) gave that error because lsfit adds a column of 1 to its first argument unless you use intercept=FALSE. Then it will give you an answer (but I think it converts your sparse matrix into a dense one before doing any linear algebra). Bill Dunlap TIBCO Software wdunlap tibco.com On

Just wondering if there's an R package which does tricks similar to what TK!Solver does. TK!Solver, for those not lucky enough to have found it, basically allows one to define a bunch of equations, assign values to an arbitrary subset of the variables, from which it calculates (either directly when possible or back-solving when not) the values of the other variable(s). thanks Carl

This is kind of like asking for a solution to x+1=x+1. Go back to linear algebra and look up Singular Value Decomposition, and decide if you really want to proceed. See also ?svd and package irlba. -- Sent from my phone. Please excuse my brevity. On April 20, 2016 4:22:34 AM PDT, A A via R-help <r-help at r-project.org> wrote: > > > >I have a situation in R where I would like

Thanks for the help. Sorry, I am not sure why it looks like that in the mailing list - it looks much more neat on my end (see attached file). On Wednesday, April 20, 2016 2:01 PM, Berend Hasselman <bhh at xs4all.nl> wrote: > On 20 Apr 2016, at 13:22, A A via R-help <r-help at r-project.org> wrote: > > > > > I have a situation in R where I would like to

I am receiving the above error ( full r session output below) the script runs OK in windows. and "genotypes" and "ploidy" are both correct arguments any suggestions would be most welcome Nevil Amos MERG/ACB Monash University School of Biological Sciences > library(Geneland) Loading required package: RandomFields Loading required package: fields Loading required

I mistakenly left a write in "/tmp" in the rockchalk package (version 1.8.109) that I uploaded last Friday. Kurt H wrote and asked me to fix today. While uploading a new one, I became aware of a problem I had not seen. The version I uploaded last Friday, 1.8.109, has OK status on all platforms except r-release-windows-ix86+x86_64. I get OK on oldrel-windows and also on devel-windows.

I have a question about reference classes, which someone here undoubtedly can answer immediately, saving me hours of wading through indecipherable internal code. :-) Thanks in advance. Reference class data is mutable, fine, but in what sense? Is it really physical, or is it just a view given to the programmer? If for instance I have vector as a field in a reference class, and I change one

Hi, I have a 60k*600k matrix, which exceed the vector length limit of 2^32-1. But it's rather sparse, only 0.02% has value. So I save is as MarketMatrix (mm) file, it's about 300M in size. I use readMM in Matrix package to read it in. If do so, the data type becomes dgTMatrix in 'Matrix' package instead of the common matrix type. The problem is, if I run k-means only on part of

I am pulling my hair out trying to figure out why trying to rename my computer joined to a Samba domain (version 3.2.3) keeps failing with "Access is Denied". In searching I found references to people with the same problem where the answer was to set the "rename user script" option in smb.conf, but I have done that (not forgetting to restart Samba) and there is no difference,

I can't bootstrap llvm-gcc4.2 on Ubuntu 11.04 32-bit. It's not a test failure; instead the configure scripts break in all kinds of mysterious yet spectacular ways. I spent a couple days beating my head against those completely indecipherable shell scripts then gave up for now. Is there a buildbot that runs Ubuntu 11.04? If not may I suggest that one be set up? A minimal Ubuntu

Hello Jean-Marc, I encoded a 143 kb file on both the desktop as well as the Pocket PC using the default settings/ Here are the results. Size : Desktop - 17.6 Kb, Pocket PC -17.1 kb (not much difference in size) Now when I try to decode the file encoded on the Pocket PC, I get a message "This doesn't look like a Speex file". However, when I decode the Pocket PC encoded file on