similar to: Rterm does not load personal library

Hello Users: I'm using R version 2.0.1, and having problems with RODBC. Everything works fine when I use Rgui, but when I try to use Rterm and issue the commands library(RODBC) con <- odbcConnect("MySQL", "test") I get the following error: Error in sqlQuery(con, str) : first argument is not an open RODBC channel In addition: Warning messages:

Hello useRs, I am trying to put my funcs in a package to avoid clutter in my workspace as the funcs are now in .Rprofile. All plain R code no compilations. Using win XP with a full cygwin install and R2.12 I first did package.skeleton("mypack",list="getdfv", namespace=T) # just a single func which created a folder with the required stuff in it. Calling R CMD build creates a

Hi the list, Some rumour (!) say that is it possible to prepare some tests for checking our code using .Rin and .Rout. It seems to be a very good practice, but I did not manage to find information on it. So does someone know how it works ? What are we suppose to write in Rin ? More precisely : - I have a package myPack.r in directories ~/myR/myPack/R/ - I create the directory

I'm having problems getting RTERM to work via SSH. Whenever it has any type of problem, it abends instead of issuing an error message and returning to the > prompt. Both "server" and client are Windows/2000 Professional at FP4. SSH is via Cygwin on both sides. R is version is 1071. RTERM runs fine when run in a BASH shell on the "server," though it does not prompt

Dear all, I writing my first package and everything seems to work (at least up to now) However when I try to build documentation (.dvi or .pdf), using Rcmd Rd2dvi.sh --pdf mypack.Rd I get a mypack.pdf whose title is "R documentation of mypack.Rd" instead of "The mypack package" as it should be, is it right? Also Version, Title, ....License, namely info from the DESCRIPTION

Hello, I'm using R 2.2.0 on a Mac and attempting to use the RODBC package to connect to a PostgreSQL server on the local network. I can't tell whether my problem is in R, or in ODBC setup. I got drivers from OpenLink, created a dsn and tested it using the iODBC application. then I load the RODBC package, use this code and get the following error. I tried with both the

Dear all, this is a rather basic question; i am not sure how to structure my data well: I want to extraxt various measures from my raw-data. These measures are of different sizes, so I decided to store them in a list, like: run1 <- list(Dom = (my_vector), mean = (my_single_number)) I can do that in a for loop for 40 runs, ending up with 40 lists: run1, run2, ..., run40. To have all the

I think I am overlooking a call or concept in R to help me easily and quickly restructure my data.frame:   Sometimes the data I receive looks like: VariableName, Run1, Run2, Run3, Location temp,               15.0,  16.0,  17.0, There   And other times it looks like: VariableName, Run, Location temp,               17.0, There   I would like to use the header information in order to be able to

As the title suggests, when building R packages on Windows, what is the difference between: R CMD build --binary mypack And R CMD INSTALL --build mypack ?? The former is suggested by my previous notes and seems to work, and the latter is suggested by http://www.biostat.jhsph.edu/~kbroman/Rintro/Rwinpack.html, and also seems to work. Thanks in advance Mick

Hello I am new in R. I am trying to implement Biomod 2 package. However, I have a doubt. I want to calculate the mean and sd of "Testing.data" (ROC and TSS) > # let's print the ROC scores of all selected models > myBiomodModelEval_55["ROC","Testing.data",,,] RUN1 RUN2 RUN3 RUN4 RUN5 RUN6 RUN7 RUN8 RUN9 RUN10 0.938 0.938 0.926 0.931 0.939

Hello, I'm starting using R and runned a little script. The generated graphic could be exported correctly with RGui.exe ("file -> save as -> jpeg -> etc.") But if I try to run the same script with Rterm.exe and followed by: jpeg(file="test.jpeg", quality=90) The created jpeg file is completely white without any color, do you know why ? Sum up of the script:

> make -d -C dir all >run1 > cd dir; make -d all >../run2 cd .. diff -udb run1 run2 | less But maybe you don't have GNU make, but some Apple (BSD-derived) make which doesn't have the "-d" switch ...

In MS Windows I a) invoke Rterm from a batch file (test.bat) b) to execute commands from a script (m:\test.rsc) c) capturing output in a log file (m:\test.log) BUT if the script results in an error the error message is NOT written to the log file, leaving me problems when the error is from a complicated function. Simplified example:. test.bat ------------------------ REM ensure

> > Generally I find it's good to look at examples that work. For > examples of packages using tests, look at source packages on CRAN. > Run the tests on them (using R CMD check), and see what gets produced. > Do you have the name of a package that use it ? I try the 10 first package, and 10 other at random, but none of them use tests... >>> Create tests/myPack.R

Hi all, I am encountering an RODBC problem in R 2.15.1 in windows 64 bit which I do not encountered in the same set up in windows 32 bit (the latest binary version of RODBC in both cases from the same depository gotten by install.packages(‘RODBC’), Oracle ODBC client software installed in 64 and 32 bit respectively) 1. The code looks like library(RODBC) credentials <-

I am having a problem with RODBC's connections. It appears that my connection to the database is closed by R automatically before I am done with it. Here is my code: foo <- function(dsn) { db <- odbcConnect(dsn) odbcSetAutoCommit(db, FALSE) data <- someDatabaseOperation(db) data2 <- someLongCalculation(data) anotherDatabaseOperation(db, data2) # This often fails b/c the

Documentation on how to put classes and methods in packages with namespace? How should I define my classes and methods in "dynamicGraph"??? (That is - Can some one point me to the documentation on how to put classes and methods in packages with a namespace? ) Currently it is done by the code below. This gives problems, when a workspace with a "dynmaicGraph" is

Hello Folks, I do hope this is the correct place to post (and not in R-SIG-DB). I have spent the better part of a day searching for an answer to this question, and have yet to resolve it. I am trying to query an .accdb Access database (with 32-bit Office 2007 currently residing on the machine) with 64-bit R via RODBC. There seem to be some conflicting accounts as to whether or not this is

Hi, I've installed the RODBC library, R1.000, NT 4.0. When I try to load it here is what I get: library(RODBC) Warning message: Package `RODBC' contains no R code in: library(RODBC) channel <- odbcConnect("PubsDSN", "sa", "password") # userId and password Error: couldn't find function "odbcConnect" Does anyone can shed some ligth on this

Dear All Sorry for what appears a trivial matter - I'm new to R and am stumbling ahead. I have a table of numerical data (36 rows by 12 columns) such as below: GM1 GM2 GM3 GM4 GM5 ...etc GM12 Run1 1 2 1 2 3 ... Run2 2 1 3 2 1 ... ... Run36 2 1 1 1 1 I would like to plot simple line graphs of some of the runs or