similar to: Installing Packages from a Local Repository

Hi guys I think there's a high chance this is a bug. But I can't rule out that I can be blamed for this. I've posted this to bugzilla (#15092). Then I read that I probably should have posted it to R-develop first. Sorry for doing this in the wrong order. I've set up a local repo on my local drive (happens to be mapped to L:/). It has the following structure (as per

I set up a local repo for testing packages. My packages are not showing up from the repository when viewed by Linux clients. I suspect this is a web administrator/firewall issue, but it could be I created the repo wrongly. I am supposed to run write_PACKAGES separately in each R-version folder. Right? Maybe other novices can use these scripts, if they are not wrong :) Here's the file

I am the maintainer of a Bioconductor package (affylmGUI) which uses tcltk. It freezes inconsistently on MS Windows, but not Mac or Unix. see details below. After considerable testing I have reduced the problem from a few thousand lines of code to 30 lines! If you paste the following lines of code into an R window: testGUI <- function(){ require(tcltk) MainWindow <-

Hi, After updating to R-3.0 beta r62328, I get the following: > install.packages("Biobase", type="source", repos="http://george2/BBS/2.12/bioc") Error in do.call(op, list(v_c, v_t[[op]])) : could not find function "R (>=2.15.1)" The problem can be fixed by adding a space after >= in the offending package's DESCRIPTION file and re-generating

Hi, I am getting unexpected behaviour from aggregate.ts(). The 'ndeltat' argument is effectively being reduced by 1 in some cases, even when it is an integer, with the result that the blocks to be aggregated are not of the expected size, and also that the end() of the aggregated series is much later than the end() of the original series. rawts <- ts(rep(1:10, each = 5), start = 1) ##

Hi all, While dat['a1',] and dat['a10',] produce the same results in the following example, I'd like dat['a1',] to return NAs. dat <- data.frame(x1 = paste(letters[1:5],10, sep=''), x2=rnorm(5)) rownames(dat) <- dat$x1 dat['a1',] dat['a10',] > sessionInfo() R version 2.7.2 (2008-08-25) i386-pc-mingw32 locale:

I run R on MS Windows. In R2.9.0dev, I type ?base to get "R help for package base" to open. I then select ".First" from the list of contents, getting a page headed: "Initialization at Start of an R Session". About half way down there is a sentence: The command-line flag --vanilla implies --no-site-file, --no-init-file, --no-restore and --no-environ. Under

Hi all, > library(rgl) > plot3d(1,1,1) > snapshot3d("somefile.png") Error in rgl.snapshot(...) : pixmap save format not supported in this build Why does this no longer work? thanks, Remko > sessionInfo() R version 2.12.0 (2010-10-15) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 [3]

Full_Name: Mark Bravington Version: 2.6.2 patched OS: Windows XP Pro Submission from: (NULL) (140.79.22.104) > grep( '[:upper:]', letters, val=T) # shurely shouldn't match anything ?? [1] "e" "p" "r" "u" The converse ( '[:lower:]' and LETTERS) seems to work OK. --please do not edit the information below-- Version: platform =

Having loaded a package that masks an object from another package, calling help(conflictedname, help_type = 'html') instead of producing a page giving the choices of help page available The page produced is Error in httpd("/library/NULL/help/nobs", NULL, NULL, c(48, 6f, 73, 74, : replacement has length zero This example is reproduced using library(gdata) help(nobs,

Hi, I am not sure how to fix the following error. LGD <- c(11.6, 12.3, 15.8, 33.1, 43.5, 51.3, 67.3, 84.9) cor (x=(file [1:47231,3:10]), y= rep (LGD, 47231), method = "pearson") Error in cor(x = (file[1:47231, 3:10]), y = rep(LGD, 47231), method = "pearson") : incompatible dimensions > sessionInfo() R version 2.13.0 (2011-04-13)

Dear R-helpers, I have a fresh installation of windows vista, and R 2.12.0 (session info below). Problem: > require(sp) Loading required package: sp Error in library.dynam(lib, package, package.lib) : DLL 'lattice' not found: maybe not installed for this architecture? > require(lattice) Loading required package: lattice Failed with error: ?package 'lattice' is not

Problem below with PCRE grep in R-devel; works fine in R-patched. (Unless there's been an absolutely massive change in rules for updated PCRE version 8.13; jeez I hope not) > grep( '[.][.]', '', perl=TRUE) Error in grep("[.][.]", "", perl = TRUE) : invalid regular expression '[.][.]' In addition: Warning message: In grep("[.][.]",

Apologies for my previous effort in HTML which apparently was scrubbed Dear R-users I wonder if I could get advice on the above problem I have just installed V 2.12.0 (I chose only the 32-bit version) into a new directory (C:/R) on a 64bit Windows 7 machine > sessionInfo() R version 2.12.0 (2010-10-15) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_Australia.1252

Hi all I have built a Bayesian network using discrete data using the bnlearn package. When I try to run the cpquery function on this data it returns NaN for some some cases. Running the cpquery in debug mode for such a case (n=10^5, method="lw") creates the following output: generated a grand total of 1e+05 samples. > event has a probability mass of 14982.37 out of

Good day, I'm trying the example cl <- makeCluster(2, type = "SOCK") from the makeCluster documentation and the R command prompt never returns. I am using a 32-bit Windows 10 computer. The problem doesn't happen on another 64-bit Windows 10 computer but does happen on another 32-bit Windows 7 computer. Can anyone reproduce it? Are there any other options that can be passed to

I get the same style of path as Hadley. This is on Windows 7 Home Premium with SP1. I start R by clicking on the R-2.31.0 icon. I'd assumed that it was a change that came with R-2.13.0! (On 32-bit Windows XP, which I have just checked, I do indeed get the 8.3 paths.) > R.home() [1] "C:/Programs/R/R-2.13.0" > sessionInfo() R version 2.13.0 (2011-04-13) Platform:

Hi, I'm trying to write a function in C for implementation with .Call. When compiling using R CMD SHLIB characters seem to be added to the function name. Here's the complete C code from the file summariseMCMC.c: #include<R.h> #include<Rdefines.h> #include<Rinternals.h> void summariseMCMC(SEXP data) { PROTECT(data=AS_NUMERIC(data)); UNPROTECT(1); } Then

On starting an R session, I get the messages: Fatal errir: unable to restore save data in .RData Error in fun(...): couldn't find function "assignInNamespace" Error: .onLoad failed in 'loadNamespace' for 'Matrix' The only object in my .RData is last.warning, thus: > last.warning $"optim or nlminb returned message false convergence (8)"

I try to update R packages via my local repository. I put all R packages in g:/myFolder/myRepository, I do like > library(tools) > write_PACKAGES("g:/myFolder/myRepository") > options(repos=c(LocalR="file://g:/myFolder/myRepository")) > getOption("repos") LocalR "file://g:/myFolder/myRepository" >