similar to: googleVis plot and knitr/sweave

Will there be anything wrong if you do not set these options? Regards, Yihui -- https://yihui.name On Mon, Jun 12, 2017 at 2:24 AM, <G.Maubach at weinwolf.de> wrote: > Hi Yihui, > Hi Duncan, > > I corrected my typo. Unfortunately knitr did not find my plots in the > directory where they reside which is different from the Rmd document. > > The documentation of knitr

Hi Yihui, Hi Duncan, I corrected my typo. Unfortunately knitr did not find my plots in the directory where they reside which is different from the Rmd document. The documentation of knitr says: base.dir: (NULL) an absolute directory under which the plots are generate root.dir: (NULL) the root directory when evaluating code chunks; if NULL, the directory of the input document will be used

I haven't figured it out entirely, but it looks like there are a couple of small glitches with knitr-based vignettes and SweaveParseOptions. I posted the tarball of a package with a knitr vignette with (as far as I can tell) everything properly coded in the DESCRIPTION file (VignetteBuilder: knitr, Suggests: knitr) and the vignette itself (%\VignetteEngine{knitr::knitr}). When Windows

Hello List, while dealing with a questin of 'xiaodao' ( http://r.789695.n4.nabble.com/Problem-with-large-small-numbers-in-knitr-tp4653986.html) I noticed that copying the default inline hook function obtained by knit_hooks$get("inline") into a knit_hook$set(inline = <...>) call turns off exponential fomatting in the resulting .tex file. I used a stripped version of

Hi All, I have to compile a report for the management and decided to use RMarkdown and knitr. I compiled all needed plots (using separate R scripts) before compiling the report, thus all plots reside in my graphics directory. The RMarkdown report needs to access these files. I have defined ```{r setup, include = FALSE} knitr::opts_knit$set( echo = FALSE, xtable.type = "html",

I have problems with very large numbers using knitr. In the following, my a and b are extremely small and ssrr and ssru are extremely large. Knitr delivers error messages. Scaling ssrr and ssru by 1000 resolved the problem: ssrr <-ssrr/1000 ; ssru<-ssru/1000 Any clue as to how I might resolve the problem? BTW, the same program does run in another computer. I am wondering whether my

I am trying to transition from Sweave to knitr, but there are a few things about customization of the appearence of R input and output that I did not get yet. Maybe somebody on the list can help me. In my Sweave presentations I used a slanted font for the R input and a normal font for the output, both in a small font. I also indented everything by an extra 2em. All this was achieved by the

Dear R helpers, I am using knitr to run analysis with R and edit my document with Latex. I am wondering whether there is a way to include 2 or more pictures per chunk and being able to refer them in the text independently and eventually whether it is possible to give them different captions. Let me give you an example.Rnw: \documentclass{article} \title{Example} \author{FS} \begin{document}

Hola a todos, ¿conocéis algún manual de knitr, además de los que aparecen en la página oficial (http://yihui.name/knitr/)? Es que en ciertas ocasiones, me gustaría conocer más sobre knitr y la página web se queda corta. También existe un libro sobre knitr (aparece en la página web), ¿alguien lo tiene y me podría decir si es recomendable su compra? Un saludo y muchas gracias. -- Víctor Nalda

Now that R 3.0.0+ supports non-Sweave vignettes, R-exts \S 1.4.2 seems to imply that it is possible to include both Sweave and knitr vignettes in a single package. I'm wondering if anyone has tried this and/or if there are some hidden gotchas putting this into practice, and concerned about creating problems with CRAN checks if I try this. Consider two vignettes: pkg/vignettes/vign1.Rnw,

Hello folks, I`m using knitr on R studio, which make it easy to use, but a coworker of mine would like to run it on "simple" R. So I was wondering if you know what is the equivalent of the button "knit HTML" in RStudio in R. I tried knit2HTML( <html> <head> <title></title> </head> <body style="background-color:white">

Gracias por las respuestas La verdad es qeu estoy trabjando con Rstudio + Knitr, lo unico que en R studio le doy a crear nuevo Sweave, pero is me carga la libreria knitr. Solucioné el problema que os comenté, era por un fallo tonto, a la hora de poner datos$A, puse dats$A, es decir, le faltaba la o.... Ahora una duda que no se como resolver es la de los gráficos. No consigo reducir su tamaño...

Hello, after trying to convert to pdf using knitr, I get the following error messages from the error log: C:/Users/duve/Documents/plots2.tex:5: LaTeX Error: Missing \begin{document}. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help You're in trouble here. Try typing <return> to proceed. If that doesn't work, type X

Hi, I am trying to create a googleVis motion chart with monthly data. When formatting the date column as a Date class variable, the plot as presented in the browser becomes considerably slower and very prone to crashing the browser. To illustrate this issue I have modified the WorldBank demo. ### objects from demo("WorldBank", package = "googleVis") M <-

Hi All, I am unable to get the plot geomap in googleVis package. data is as follows > head(index.ret) country ytd 1 Argentina -10.18 2 Australia -3.42 3 Austria -2.70 4 Belgium 1.94 5 Brazil -7.16 6 Canada 0.56 > map1 = gvisGeoMap(index.ret,locationvar = 'country', numvar = 'ytd') > plot(map1) But it just displays a blank page, showing an

Hello, I'm having some issues getting a ggplot figure to show up in the knitr output, when placed in a loop. Specifically, I have a loop inside a knitr chunk : ```{r fitting, warning=FALSE, fig.width=10, fig.height=10, fig.keep='high'} for (t in 1:T) { # do a regression of tgt.vals ~ predictors and compute coeffs and fitted values (fit.vals / fit.adj.vals) plot(

Might not be the best place to ask, but i could get lucky.. I have setup an eclipse environment to write sweave files lately and wanted to switch to knitr. I could get it to work on easy files, but my earlier written sweave file fails to be knit properly. Here is the error message: Quitting from lines 273-276: Error in setwd(base.dir) : kann Arbeitsverzeichnis nicht wechseln (it says: cannot

Buenas. Esta mañana estoy trasteando un poco con googlevis, sobre todo para ver si introducimos algunos gráficos chulos en la página web de la empresa ( hacemos estudios sociológicos). Y estaba viendo esta página http://neurochem.sisbio.recerca.upc.edu/?p=276 y no encuentro la forma de reproducir el gráfico de las puntuaciones factoriales . Usando gvisScatterChart puedo dibujar los puntos

Muchas gracias Carlos. Tengo las mismas versiones pero no logro separar los chunks cuando uso #+, pero si lo logro cuando uso #". Mi script es spin("prueba.R", knit = FALSE) y si me hace un Rmd. #+ a = c(1,2,3) #+ mean(a) Ejecuto, > spin("prueba.R", knit = FALSE) y obtengo un prueba.Rmd ```{r } a = c(1,2,3) ```{r } mean(a) ``` Pero si escribo: #' a =

Muchas gracias Carlos. Tengo la versión de knitr 1.14 Corrí el ejemplo que me dices y resulta en lo mismo, no se crean chunks diferentes. Parece que para separar chunks se debe incluir #' Por ejemplo, estas 2 líneas de códigos del ejemplo: #+ test-chisq5 sum(x^2) # chi-square distribution with df 5 #+ test-chisq4 sum((x - mean(x))^2) # df is 4 now Dan como resultado en el Rmd (todo queda