similar to: Annotation using org.At.tair.db package in R

Hello, helpeRs, I am attempting to reshape (either base R or package reshape) multiple .csv spreadsheets from a very unfortunate wide format to long format. ?Each spreadsheet looks something like this, after being read in to R: toy <- data.frame(year = rep(2007:2008,each = 20), month = rep(1:5,each = 4, length = 40), day = rep(1:2,each = 2,length = 40), hhmm = rep(1100:1101,length = 40),

Hi! I'm trying systemtap on CentOS 6.2 kernel-2.6.32-220.23.1.el6.x86_64. My problem is that I can't find kernel-debuginfo... corresponding to my kernel version. The systemtap docs suggest rebuilding the kernel from sources, but it looks like I will have to install my own kernel, which is not acceptable on the production machine. Where can I find the debuginfo for the latest CentOS

Dear All, maybe this is something obvious, I seem to be incapable of understanding how S4 works. So, in package 'A' I defined a "summary" method for my class: setMethod("summary", signature(object="ListHyperGResult"), function(object, pvalue=pvalueCutoff(object), categorySize=NULL) { "whatever" })

Hi, I was installing hundreds of packages on a machine with a single call to install.packages() and after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ?hgu133aprobe?, ?hgu95av2.db?, ?BSgenome.Celegans.UCSC.ce2?, ?BSgenome.Mmusculus.UCSC.mm10?, ?BSgenome.Dmelanogaster.UCSC.dm3.masked?,

?Hola, Es más fácil que todo eso... Es que en tu fichero de entrada, la segunda fila son las unidades de las variables que tienes en la primera fila, pero "R" al leerlas las considera como un string que altera la clase de toda la columna cuando ésta es numérica. Simplemente eliminando esa segunda fila, las columnas acaban teniendo la clase que deben..

Hello. I have two soundcards (with alsa 1.0.11rc4, and OSS emulation) on my machine, and I would like to change the one Wine is using; I didn't find anything in the system.reg, and I believe ~/.wine/config isn't used anymore? The sound works, but I would like to use /dev/dsp1 instead of (default) /dev/dsp. I can't use winecfg, it throws an unhandled exception when I click on the

Hi folks, I've been reading the excellent howto collection by John et al., but have been tairing my hair out over a rather simple setup. We have an NT4 based PDC which we'd like to use to authenticate users for a BEA Weblogic application. Is it possible to configure Samba 3.0.2a as a Domain Member server without a local copy of the SAM on the Linux Samba server? The documentation

Hi list, I have a problem with dovecot 2.2.5 and nightly (latest 20130923) with : * plugin listescape enabled * shared mailbox * and mail_shared_explicit_inbox = no Problem is I can't get list of mails in INBOX of my shared users. For example : ---------------------------------------------------------- 2013-09-23 22:20:06 imap-login: Info: Login: user=<roms>, method=PLAIN,

Hello useRs I am trying to build a package for personal use and for making easier working with other people but I keep getting the same error message about the DESCRIPTION file not existing. when trying to install from a source tar.gz file: Error in .read_description(dfile) : file 'C:/Users/Propriétaire/AppData/Local/Temp/RtmpHFMONb/R.INSTALL647a3535/mypkg/DESCRIPTION' does not

Dear i have connected Samba 3.5.6 with an Active Directory 2008 R2 When i try to get the uid number of an Active Directory user on the linux box: ********************************************* root at bdc2:~# id angelique id: angelique : utilisateur inexistant (means non existent user) ********************************************* The winbindd debug claim NT_STATUS_OBJECT_NAME_NOT_FOUND and

Hi All, I have an CBS segmentation algorithm output for 10 tumor samples each from 2 different tumors. Now, I am in an urgent need to assign gene (followed by all genes present) that belong to a particular segment after I removed all the CNVs from segment data. The format of the data is: Sample Chromosome Start End Num_Probes Segment_Mean Sample1A-TA 1 51598 76187 15

Hi, is there any package/function in Bioconductor that can do this: if given the chromosome positions of a fragment, find out all genes within, and with the information about which strand is the sense strand. And vice versa. Thanks a lot. ----- Appreciate your time & attention! -- View this message in context: http://www.nabble.com/list-genes-w-n-a-genomic-fragment-tp18331452p18331452.html

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Hi I would like to start by thanking everyone that replied. Thank you for the information, and for the comments about how or why you use it and thankx for the encouragement re my talk.... Please note that I do not claim to have ellicited a reply from all users of R, this is a quick survey not a census. I have tried to break the responces down to the following categories: Where: (hopefully

>I am interested in R as an alternative for a statistical tool >at our firm. Ditto... I have recently moved to this agency from a company where I had access to Splus. There is also a coworker here who had used Splus at a previous employer. We both would like some access to the S language. We are considering either begging loud and long to try to get the agency to purchase two copies of