similar to: generic question about differences between PCA and DMFA

Dear Dr.Goslee and anyone may intrested in matrix manipulate, I am using your ecodist to do mantel and partial mantel test, I have locality data and shape variation data, and the two distance matrixs are given as belowings. When I run the analysis, it is always report that the matrix is not square, but I didn't know what's wrong with my data. Would you please help me on this. I am quite

Hi all, As a molecular biologist by training, I'm fairly new to R (and statistics!), and was hoping for some advice. First of all, I'd like to apologise if my question is more methodological rather than relating to a specific R function. I've done my best to search both in the forum and elsewhere but can't seem to find an answer which works in practice. I am carrying out

Starting with data from a microarray experiment and I would like to analyse the influence of two factors (age, treatment) on gene expression. Looking through the r-help archives and the web I tried the following: I put my data in a dataframe similar to this one: > example.df <- as.data.frame(matrix(data=runif(32,100,1000), nrow=4, ncol=4)) > example.df <-

Hi List, I'm following on the discussions regarding the use of exploratory factor analysis with binary data, from nabble: http://www.nabble.com/PCA--for-Binary-data-to11050371.html#a11092127 and i tried using FactorMineR package but unfortunately i have trouble understanding what are the types of the variables which AFDM is suitable for? I guessed from that example in ?AFDM that

Hello everybody, this is my first request about R so I am sorry if I send it to a bad mail or if I am not very clear. So my problem is about the use of rfImpute from randomForest package. I am interested in imputations of missing values and I read that randomForest can make it. So i write the following code : set.seed(100); library(mlbench) library(randomForest) data(BreastCancer)

Hi there ! I've got 7 Samples that may contain 29 differents kinds of material.... every line below corresponds to a differente kind of material, example: Sample 1, 2,3,5 and 6 has material 1 .... So I want to know how can I do a Venn Diagram with the data below .... ps ( it was generated by a csv, where every line is sep with (";")) Can someone helps me ? thanks csv file :

Dear List I'm a newbie R user. I'm utilizing the list function in order to make a var like this: clusters<-list(a=var1,b=var2....) My problem is that the total numer of variables that I need to include in my list is up to 200. I've the text string with the complete list of my variables but is too long to cut and paste in my bash shell. So is there a way too import the list from a

Dear list I've a generic question about how to tune an SVM I'm trying to classify with caret package some population data from a case-control study . In each column of my matrix there are the SNP genotypes , in each row there are the individuals. I correctly splitted my total dataset in training(132 individuals) and test (50 individuals) (respecting the total observed genotypic

Dear user is the first time that I use wine. I'm trying to install with wine 1.31 a technical software for analyzing some biological data. Starting from a shell I retrieve always the same error Please could someone give to me some suggestion about what this error mean? thank you very much Guido fixme:sfc:SFC_3 0 fixme:advapi:SaferCloseLevel ((nil)) stub err:ole:create_server class

I've been having 'gappy' audio problems with nufone for about a week now but I think I've nailed it down. Setup: office* - iax2 - colo* - iax2 - nufone office* and colo* are identical physical hardware (Xeon 2.8, dual ethernet, solely used for Asterisk) -- they are joined together through their second ethernet ports over a dedicated 2meg SDSL link. One hop between office* and

Hi all, After running kruskal.test I have got results (p<0,005) pointing to reject the hypothesis that the samples were draw from the same population. Howerver when I run the kruskalmc there are no significant differences in any of the multiple comparisons. Is that possible? Some clarification? Thanks, Humber <https://sites.google.com/site/humberandrade> [[alternative HTML version

Hi, After I do a : upscmd ellipse@localhost test.battery.start How do I tell its running, what the status is, etc. Thanks, Tuc

Hi All, I was wondering if someone could help me to solve this issue with lmer. In order to understand the best mixed effects model to fit my data, I compared the following options according to the procedures specified in many papers (i.e. Baayen <http://www.google.it/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&ved=0CDsQFjAA

Dear Thierry, thank you for the quick reply. I have only one question about the approach you proposed. As you suggested, imagine that the model we end up after the model selection procedure is: mod2.1 <- lmer(dT_purs ~ T + Z + (1 +T+Z| subject), data =x, REML= FALSE) According to the common procedures specified in many manuals and recent papers, if I want to compute the p_values relative to

Already outdated, but rounded ;) I literally just opened the 5yrs logo, changed the text and then done: inkscape -z -o logo/fish-10yrs.{png,svg} cp {logo,website}/fish-10yrs.svg and then updated the rest of the files. Signed-off-by: Martin Kletzander <mkletzan@redhat.com> --- Makefile.am | 2 + logo/fish-10yrs.png | Bin 0 -> 65790 bytes logo/fish-10yrs.svg |