similar to: export variable from bash to R

Dear R-users! Is there a way to obtain the name of the executed myscript.r, i.e. when cmd> rscript myscript.r is executed? (The name of the script in this case is "myscript.r") Here is the explanation of why I would like to get that: Why: I have prepared a set of scripts (decompose_data.r, plot_with_higher_resolution.r, plot_3D.r, etc.) placed in a root directory at one place. I

Hi, I'd like to spawn of a new R process from within R using system(), e.g. system("R -f myScript.R"). However, just specifying "R" as in that example is not guaranteed to work, because "R" may not be on the OS's search path. What is the best way, from within a running R, to infer the command (basename or full path) for launching R in way that it works on

Hi Community, I have a question about how to pass command line parameters to R script running in the batch mode. The problem is: there is a banch of data files which are to be processed by R script called from a web-server, i.e. in the batch mode. The web server generates data files and passes their names calling 'R CMD BATCH' one by one for every file. Now the question is how to

I am calling a bash script and passing in somestring that includes a "$" myscript "$plusmore" I want to assign in the myscript the $1 arg to something like MYTEXT="$1" when I do that I dont get what I'm expecting. if I do MYTEXT='$1' I still dont get what I'm expecting. On the first assignment of MYTEXT I do not want the "$" to be

Hello, I have found what I believe to be a bug in the Linux version of the Rscript binary. Under Windows (official 64-bit 3.5.1 R distribution running on an up-to-date Win10), I can do the following (e.g. under powershell): PS H:\Users\Cesko> Rscript -e 'ls() >> ls()' character(0) character(0) which works as I expect: I am running Rscript with two arguments, namely (1)

Hi, We are a company developing a software mainly in C++. We want to integrate R inside our software in order to use mainly the engine (usual stats as mean, sigma, Pearson, outlier detection, CPA, multivariate, ...) and probably later the chart solution. Of course we don''t want to temporary write the data to some csv files and then do an ugly system() call :

Hi, We are a company developing a software mainly in C++. We want to integrate R inside our software in order to use mainly the engine (usual stats as mean, sigma, Pearson, outlier detection, CPA, multivariate, ...) and probably later the chart solution. Of course we don''t want to temporary write the data to some csv files and then do an ugly system() call :

The loop that echoes the arguments almost always stops too soon. It apparently does that to avoid echoing the "--args" (that had been inserted) when there are no user arguments. However, when there are user arguments, the next element of the 'av' array is the last argument and usually not "--args", although it can be. ?Rscript is a little sketchy: ?--verbose?

Hi, I have a bunch of R scripts which have the hash bang !/usr/bin/env Rscript and I typically run these scripts by passing in some parameters like this: ./nameOfRScript arg1 arg2 ... I know Rscript has the option to run in --vanilla. Where exactly do I insert the --vanilla option? When I do something like this: ./nameOfRScript --vanilla arg1 arg2 ... And I try to access the commandArgs,

Dear all I am running in a problem when trying to run R from Windows command line. I am runnning Windows Vista, R-2.10.1. I have a script I would like to run remotely from another program. As it did not work, I thought I would test the script from the Windows command line which highlighted a problem. When I open the command line and type R at the prompt (or any other variant (R CMD BATCH,

Hello list Is there a way of identifying from within R whether a script has been source(d) from Rgui.exe or via Rscript.exe in batch mode? For the code I have I use the commandArgs() function to pick up command line args when running in batch mode via Rscript.exe However I like to get the code working manually first using source("MyRCode.r") I'd like to be able to put something at

Dear Everyone, I am using R 2.6.2 on my Redhat AS4. I installed the RPM offered on the cran website. I would like to use R from my bash console with the following command: /path/to/R --vanilla --slave --args < /data/myscript.R this script invokes a range of functions and tools, among others to process a bunch of raster images in a loop using GDAL. The thing is that releasing this command in

Hello all and thanks in advance, I know you can start R with either: 1. R CMD BATCH myfile.R or 2. R < myfile.R My question is this: what if I want multiple input files and/or command line arguments. For example, under unix you can run a script command (in a shell language, perl, or python) like: python myScript.py or better yet, if you have things set up right, you can place a

Hola. Tengo un script con la siguiente estructura. #!/usr/bin/env Rscript args = commandArgs(trailingOnly=TRUE) source("carga-datos.R") source("modelo.R") y quiero llamar a mi script desde consola con Rscript --vanilla miscript.R datos1.csv De forma que se guarde como argumento el nombre del fichero que quiero cargar y se pase a al script carga-datos.R. El problema es

I think there's a minor bug in the argument-processing carried out by Rscript. The effect is that if one passes "-g" as a flag to the script, it is erroneously exposed to the main executable's argument processing and therefore generates a message about not being able to comply with the request for a particular GUI. Uppercase G is fine as are the other 25 letters in upper or

Dear R experts: I am a bit stymied by how the argument picking-off works in R batch file usage. $ cat commandArgs.R cat(" Command Line Arguments were ", commandArgs(), "\n"); $ /usr/bin/R CMD BATCH commandArgs.R --args 1 2 3 $ /usr/bin/R --args 1 CMD BATCH commandArgs.R ... I am now getting into interactive mode ?! I guess it really is skipping the rest of the command line

I have the following script (also attached): #!/usr/bin/Rscript spec=matrix(c( 'verbose', 'v', 1, "integer", 'help' , 'h', 0, "logical" ),ncol=4, byrow=TRUE) spec.dim=dim(spec) spec.opt.long=spec[,1] spec.opt.short=spec[,2] spec.opt.l <- spec.dim[1] infile <- "test.dat" args=commandArgs(TRUE); l=length(args) self =

Dear R-users, I have written a small application (in visual basic) that automatically generate some R scripts. I would like to execute these scripts when my application is being closed. My problem is that I don't know how to pass the 'source(c:/.../myscript.r)' instruction when I programmatically start RGui. Tinn-R is capable of doing such things, so I guess there must be a way

I would like to write a block of code that runs when a script is being run from Rscript, but not to run if the same file is being source()d, or submitted via ESS, etc. As a gloss I would like to write a file that looks somewhat like: #!/usr/bin/env Rscript my.func <- function(...) { #do something... } if ( #is.running.Rscript# ) { do.call(my.func, commandArgs(trailingOnly=TRUE)) }

I would like R CMD build to run some R code which does some stuff and save the result as a file in /inst/docs folder. Is there any way of doing this. Thank you. Johan ____________________________________________________________________________________ We won't tell. Get more on shows you hate to love [[alternative HTML version deleted]]