similar to: install.packages() fails if .libPaths() set

Hello, I'm having some trouble trying to set the .libPaths() on Windows 7, R-2.15.0 and R-2.15.1. The environment variables R_LIBS and R_LIBS_USER are set according to the help page for .libPaths() and the Rprofile.site file has the default setting, as shown below. R-2.14.1 recognizes the lib paths but not R-2.15. Is this a bug or am I doing something wrong? (I've also tried with

I have a local library 'dart' that imports "httr". It has routines that access central patient data such as birth date, so it is heavily used locally but of no interest to anyone else. The httr library (and 300 others) are in a shared directory, referenced by everyone in the biostatistics group via adding this location to the .libPaths in their default .Rprofile.

Hi all, Recently, when compiling R packages containing C code, I've started getting the following error: * installing to library ?/Users/hadley/R? * installing *source* package ?appdirs? ... ** Creating default NAMESPACE file ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG

Hi all, I frequently find that I've failed to export something in my NAMESPACE and hence my package doesn't work when it's imported into another package. Does anyone have suggestion for debugging this type of problem? R CMD check passes without any ns related errors on both the importee and the importer. I've attached a reproducible example - if you install the development

Hi all, I've been trying to get a better handle on what manipulations lead R to duplicate a vector, creating small experiments and using tracemem to observe what happens (all in 2.15.1). That's lead me to a few questions, illustrated using the snippet below. x <- 1:10 tracemem(x) # [1] "<0x1058f8238>" x[5] <- 5 # tracemem[0x1058f8238 -> 0x105994ab0]: x[11] <-

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi I am sure I am missing something really basic, but I can't figure it out. I want to start R so that I can specify the location for the Library tree. In principel simple: As I only want it dependent on the directory I stat R in, I put a .Rprofile file in the directory. My default path is: > .libPaths() [1]

Dear colleagues, I am having issues trying to build a R package I recently wrote. I am using R 2.14.0 and my package depends on another package called aod. Running: R CMD Sweave vignette.Rnw is perfectly fine and the vignette compiles properly. but when I use R CMD build mypackage to build the tar.gz I get the following error: * installing the package to re-build vignettes * creating

Hello I use the function .libPaths() > .libPaths() [1] "/usr/local/lib/R/library" > .libPaths(c("/usr/local/lib/myRlib","/usr/local/lib/library")) > .libPaths() [1] "/usr/local/lib/R/library" but it simply does not pick up the new path. Can anybody help? (The problem originates from the inability to install packages into

High, on all of my computers the first entry in libPaths for root was /usr/lib64/R/library or /usr/lib/R/library. Now it change at one (lynx) anyway to root at lynx:/root(2)# R R version 2.12.1 (2010-12-16) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv("HOME"),"/Library/R/",paste(R.version$major,as.integer(R.version$minor),sep='.'),"/library",sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I

> On Nov 23, 2017, at 4:34 AM, Loris Bennett <loris.bennett at fu-berlin.de> wrote: > > Hi, > > TL;DR > ----- > > I define the path > > /cm/shared/apps/R/site-library/3.4.2 > > and add it to libPath. Why does libPath then display it as > > /cm/shared/apps/R/site-library/3.4 Generally one only has a different library for each major

Good day, I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." However, $ export R_LIBS=/users/stgrad/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor"

The specific message is: "Warning: package 'spatial' in library '/usr/lib/R/library' will not be updated" and the number of libraries about which that's the complaint is now increasingly almost daily so clearly something is wrong. I'm working on a laptop on which I do the recommended Ubuntu updates daily. I done a standard installation of R 2.15.1 using

Hi, TL;DR ----- I define the path /cm/shared/apps/R/site-library/3.4.2 and add it to libPath. Why does libPath then display it as /cm/shared/apps/R/site-library/3.4 ? Long version ------------ I run a cluster of diskless nodes for which the OS is loaded directly into RAM and other software is provided by an NFS server. However, in the case of R, we use the R version provided

I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain R_LIBS_USER. I also noticed that R related variables are not in the system or user variables because I

Dear list, I?m using R embedded in another program (coded in tcl/tk) under Windows Vista. In this context I don?t launch Rgui.exe but rather Rtem.exe. Now I have a problem finding libraries not specifically installed as administrator (and which are not in the path ?program files? but in Contacts\Documents of the current user). To be precise, the user launching my tcl/tk program can?t find

Should the following two functions should always give the same result, except for possible differences in the 'call' component of the warning or error message?: f0 <- function(x, y) x || y f1 <- function(x, y) if (x) { TRUE } else { if (y) {TRUE } else { FALSE } } And the same for the 'and' version? g0 <- function(x, y) x && y g1 <- function(x, y) if

Good day, If the library path is changed with .libPaths, the command install.packages("/nb/dario/Biostrings_2.39.9.tar.gz", repos=NULL) fails with ** testing if installed package can be loaded Error : package ?S4Vectors? required by ?Biostrings? could not be found However, running library(S4Vectors) followed by sessionInfo() after the error shows that the package can indeed be

Hi all, What's the equivalent to length(unique(x)) == 1 if want to ignore small floating point differences? Should I look at diff(range(x)) or sd(x) or something else? What cut off should I use? If it helps to be explicit, I'm interested in detecting when a vector is constant for the purpose of visual display. In other words, if I rescale x to [0, 1] do I have enough precision to get

> On Nov 23, 2017, at 4:34 AM, Loris Bennett <loris.bennett at fu-berlin.de> wrote: > > Hi, > > TL;DR > ----- > > I define the path > > /cm/shared/apps/R/site-library/3.4.2 > > and add it to libPath. Why does libPath then display it as > > /cm/shared/apps/R/site-library/3.4 > > ? > Because it is a symbolic link.