similar to: R-2.15.1 CMD CHECK output: "Call Sequence"

Calling library(..., quietly=TRUE) may still output: Loading required package: <other pkg> in some cases, e.g. > library("R.utils", quietly=TRUE) Loading required package: R.methodsS3 [...] I traced this to base:::.getRequiredPackages2(), which forgets to pass 'quietly' to an internal library() call: if (!attached) { if (!quietly)

Dear R-core devs, I hope this email finds you well. Please see the proposed patch to R-devel below: Scenario: When loading a package using `library`, a package may not be found if the cases are not matching: ``` > library(ORG.Hs.eg.db) Error in library(ORG.Hs.eg.db) : there is no package called 'ORG.Hs.eg.db' ``` Suggested Patch: Returns a message matching what

Hola Quiero ejecutar R desde Jupyter Lab y me encuentro con un error al invocar la librería dplyr. Este error no aparece cuando ejecuto RStudio. La sesión de R en jupyter lab: sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 14393) Matrix products: default locale: [1] LC_COLLATE=Spanish_Chile.1252

Hi Luke, Thank you for your response. On 6/21/19 10:56 AM, Tierney, Luke wrote: Thanks for the suggestion. However I don't think it is the right way to go. I also don't care for what install.packages() does. Signaling a warning and then an error means someone has to catch both the error and the warning, or suppress the warning, in order to handle the error programmatically. I do care

I have a peculiar problem that I'm sure is a simple one, but I can't figure out what my mistake is. Can someone enlighten me? I have a simple file, class.R: ## setClass("abc",representation(a = "character", b = "ANY")) I have a package directory ExpressCGH1 made with package.skeleton. The package happily builds and installs, but R CMD check fails with

I'm seeing errors with R CMD check that I don't understand when checking a package that uses a NAMESPACE file with an import directive. The imported package is listed in the DESCRIPTION file in the Imports field. DESCRIPTION contains: Imports: arules NAMESPACE contains: import(arules) The package builds without warnings and installs and loads just fine. But check has this to

Hello, I have a very minimal package "simplepkg" (DESCRIPTION, NAMESPACE, and R) with S4 classes/methods (defines a class "foo" and a show method for that class" - both the class and show method are exported). I can seemingly install the package, then load and use it: > sessionInfo() Version 2.3.1 (2006-06-01) sparc-sun-solaris2.10 attached base packages: [1]

Dear R-developers, I am getting the following error message (see bottom of e-mail) and can't make a clue out of it. The zzz.R file contains .First.lib <- function(lib, pkg) library.dynam("SBMLodeSolveR",pkg,lib) .Last.lib <- function(libpath) library.dynam.unload("SBMLodeSolveR", libpath) There is a SBMLodeSolveR.so file in the src directory which works if loaded

Hi, I am new in writing R extension. I read the "Writing R Extensions", and search online but just cannot find the answer. I am trying to add c-code, which depend on GSL C library, into my R package. I am using Max OS-X 10.4.3, powerpc-apple-darwin8-gcc-4.0.1 I begin wtih package.skeleton, and then add my c file into folder src and then add file Makevars: PKG_LIBS=-lgsl

I am writing my first R package, and I have been getting the following series of errors when I run R CMD check: * checking S3 generic/method consistency ... WARNING Error: package/namespace load failed for 'REEMtree' Call sequence: 2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), call. = FALSE, domain = NA) 1: library(package,

Dear R-users, i'm a very newbie in linux, but decided to build R from source. Following the "R Installation and Administration" manual, i did this: ./configure --enable-R-shlib # this option is here because i intend to build the GNOME console after... make make check no problems in make check, but: make check-devel #and also make check-all indicated some WARNINGs in the log

Doing it like this: genericForPrimitive <- function(f, where = topenv(parent.frame()), mustFind = TRUE) { ans = .BasicFunsList[[f]] ## this element may not exist (yet, during loading), dom't test null if(mustFind && identical(ans, FALSE)) stop(gettextf("methods may not be defined for primitive function %s in this version of R",

I'd like to pick up this thread started on 2019-04-11 (https://hypatia.math.ethz.ch/pipermail/r-devel/2019-April/077632.html). Modulo all the other suggestions in this thread, would my proposal of being able to disable forked processing via an option or an environment variable make sense? I've prototyped a working patch that works like: > options(fork.allowed = FALSE) >

I am seeing very strange behaviour in R 3.2.0 patched (r68272) and a new build of R-devel. The sessioninfo() from the former is below. Here's what I see: If I set the locale, and trigger a namespace load, a version comparison gives NA, and I get an error. For example, in a new session started with R --vanilla from the terminal: > Sys.setlocale(locale='en_US.UTF-8');grid::gpar()

Thanks for the suggestion. However I don't think it is the right way to go. I also don't care for what install.packages() does. Signaling a warning and then an error means someone has to catch both the error and the warning, or suppress the warning, in order to handle the error programmatically. Now that library() signals a structured error there are other options. One possibility, at

If I understand the thread correctly this is an RStudio issue and I would suggest that the developers consider using pthread_atfork() so RStudio can handle forking as they deem fit (bail out with an error or make RStudio work). Note that in principle the functionality requested here can be easily implemented in a package so R doesn?t need to be modified. Cheers, Simon Sent from my iPhone

Hi, just a little wish : Could we have one (or maybe more) standardized optional tag(s) for package DESCRIPTION files to cover svn revision info? This would be very useful for bug reporting... I know that any developer is already free to append corresponding lines to DESCRIPTION files to do something of this sort --- e.g. lines like LastChangedDate: {$LastChangedDate: 2009-03-31 $}

> On 6/21/19 10:56 AM, Tierney, Luke wrote: > [...] > Something that would be useful and is being considered is having a > mechanism for registering default condition handlers. This would allow > the condition to be re-signaled with a custom class and then having > a custom conditionMessage method is less likely to cause conflicts. Is it correct that you are proposing something

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

hello, i try to create a package , and i call a library in the namespace file such as : useDynLib(quadprog) after checking my directory with the command "rcmd check" (i am on WindowsXP) i get an error: package / namespace load failed the path of the library is: D:\R\library\quadprog the path of the building files is: D:\RBuild\svcR and the comand i use to compile is: rcmd