Displaying 20 results from an estimated 2000 matches similar to: "Two questions about R2BayesX package"
2012 Jun 06
3
Predict in the package R2BayesX
Hi all
I'm using the function bayesx to estimate a simple model, for example:
library(R2BayesX)
## generate some data
set.seed(111)
n <- 200
## regressor
dat <- data.frame(x = runif(n, -3, 3))
## response
dat$y <- with(dat, 1.5 + sin(x) + rnorm(n, sd = 0.6))
## estimate models with
## bayesx REML and MCMC
b1 <- bayesx(y ~ sx(x), method = "REML", data = dat)
I want
2012 Jun 06
2
R2BayesX (command bayesx) doesn't work
Hi all,
I have a problem with the library R2BayesX, when i try to use the command
bayesx i get this error:
dyld: Library not loaded: /usr/local/lib/libreadline.5.2.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/2.15/Resources/library/BayesXsrc/libs/i386/BayesX
Reason: image not found
I obtain this message also with the example in the bayesx help:
## generate some data
2016 Apr 22
0
R2BayesX help
Hi,
I wonder if anyone can help me with this issue. I am using R2BayesX. It
seems that the model can maximally contain 20 interactions. When the number
of interaction terms exceed 20, the code stops working. Here is a piece of
toy code.
rm(list=ls())
library(BayesX)
library(R2BayesX)
#data generating model
f2<-function(x1,x2,x3,x4)
{
y<-2*sin(pi*x1)*1.5+exp(2*x2)/3+2 * sin(4 * pi * (x3
2005 Apr 08
1
new R package BRugs
Hi,
this is the first announcement of a *developer version* of the R package
BRugs, which is based on OpenBUGS 2.1.0.
OpenBUGS 2.1.0 has been released earlier this week
(http://mathstat.helsinki.fi/openbugs/).
BRugs contains a complete OpenBUGS installation as well as R code to
access OpenBUGS functionality from R. Simply install the package, load
it and say ?BRugs and ?BRugsFit
2011 Jun 27
0
OpenBUGS and glmmBUGS package
Dear All,
I am trying to use the glmmBUGS package with OpenBUGS under Linux.
Here is a short list of code I modified from the diseasemapping
package document:
----------------------------------------
library(diseasemapping)
data(popdata)
data(casedata)
model = getRates(casedata, popdata, ~age*sex, breaks=seq(0, 90, by=10) )
ontario = getSMR(popdata,model, casedata)
spplot(ontario,
2004 Sep 29
0
[Fwd: OpenBUGS]
This is slightly off-topic, but there was a discussion about MCMC a
couple of weeks ago. OpenBUGS can operate from R, at least in Windows
(there are some problems in Linux at the moment).
The interface with R is one are that there are plans to work on: it's a
bit basic at the moment.
Bob
--
Bob O'Hara
Dept. of Mathematics and Statistics
P.O. Box 68 (Gustaf H??llstr??min katu 2b)
2008 Jan 31
1
R2WinBUGS is broken
Dear R-users,
I am trying to use the following code to reproduce results from Prof.
Gelman's book, but have the listed error for R2WinBUGS version (the openbugs
version is good). I am using R-2.6.1 on windows XP, and all the R packages
are most current ones. schools.bug can be found at
http://www.stat.columbia.edu/~gelman/bugsR/runningbugs.html . Can anyone
help me to figure out what's
2008 Dec 20
2
Problems installing lme4 on Ubuntu
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Hash: SHA1
While I'm not an R expert, I have used R on Windows XP. Now I've moved
to Ubuntu (Intrepid), and I'm trying to configure R to work with the
Gelman and Hill _Data Analysis Using Regression and
Multilevel/Hierarchical Models_. So far, it's not working.
I start by following the instructions for installing arm and BRugs at
2006 Jan 16
3
Current state of support for BUGS access for Linux users?
Greetings:
I'm going to encourage some students to try Bayesian ideas for
hierarchical models.
I want to run the WinBUGS and R examples in Tony Lancaster's An
Introduction to Modern Bayesian Econometrics. That features MS
Windows and "bugs" from R2WinBUGS.
Today, I want to ask how people are doing this in Linux? I have found
a plethora of possibilities, some of which are not
2007 Aug 06
2
Makefile for embedding OpenBUGS in R package
Dear list,
I'm trying to embed OpenBUGS in an R package for use of it
on 64-bit Linux. In order to get the CLI working one has to
compile C code contained in $OpenBUGS/Manuals/CBugs.html
(copied to say CBugs.c) using
gcc -m32 -o bugs CBugs.c -ldl
I put the OpenBUGS distribution in the ./inst subdirectory of
the package root. Where should I now put the CBugs.c and how
2010 Nov 02
5
Question about ggplot2
Dear All,
I am trying to graph a simple scatter plot where the x axis is year
and the y axis is a percentage (percentage of infant death). Instead
of plotting the raw data, I want to plot summary statistics such as
mean and median. Here is the problem: the value range of y is between
0 and 1, but since infant death is a rare event, the mean and median
is very low (something like 5%), which shows
2005 Aug 18
1
Error messages using LMER
Dear All,
After playing with lmer for couple of days, I have to say that I am
amazed! I've been using quite some multilevel/mixed modeling packages,
lme4 is a strong candidate for the overall winner, especially for
multilevel generzlized linear models.
Now go back to my two-level poisson model with cross-classified model.
I've been testing various different model specificatios for the
2008 Feb 18
2
Hazard model with long-term survivor (cure model)
Dear All,
Are there R packages that can estimate survival model with long-term
survivors? This is sometimes known as "cure" model or "split-population"
model. Thanks.
Shige
[[alternative HTML version deleted]]
2005 Aug 18
0
[SPAM] - Re: How to assess significance of random effect in lme4 - Bayesian Filter detected spam
Actually, I re-read the post and think it needs clarification. We may
both be right. If the question is "I am building a model and want to
know if I should retain this random effect?" (or something like that)
then the LRT should be used to compare the fitted model against another
model. This would be accomplished via anova().
In other multilevel programs, the variance components are
2017 Jun 07
1
Errors running spdplyr example
Dear All,
When I tried to run the following code (taken from the *spdplyr* package
vignettes):
library(spdplyr)
library(maptools)
data(wrld_simpl)
worldcorner <- wrld_simpl %>%
mutate(lon = coordinates(wrld_simpl)[,1], lat =
coordinates(wrld_simpl)[,2]) %>%
filter(lat < -20, lon > 60) %>%
dplyr::select(NAME)
I got the following error messages:
Error in (function (cl,
2005 Aug 30
1
How to set starting values for lmer?
Dear All,
Can anyone give me some hints about how to set starting values for a lmer
model? For complicated models like this, good starting values can help the
numerical computation and make the model converge faster. Thanks!
Shige
[[alternative HTML version deleted]]
2011 Feb 13
1
Changes titles in ggplot2 plot
Dear Colleagues,
In the following simple ggplot2 code:
--------------------------------
m <- ggplot(d.fig, aes(time, prob))
m + stat_summary(fun.data = "median_hilow", conf.int = .95, geom =
"smooth") + facet_wrap(~ Cohort, nrow=1) + coord_cartesian(ylim = c(0,
.03))
--------------------------------
Is there a way to replace the y-axis label from "prob" to
2013 Feb 18
1
compare posterior samples from R2OpenBugs and R function bugs{R2WinBUGS}
Hi all,
I used both OpenBugs and R function bugs{R2WinBUGS} to run a linear mixed
effects model based on the same data set and initial values. I got the same
summary statistics but different posterior samples. However, if I order
these two sets of samples, one is generated from OpenBugs and the other is
generated from R, they turn to be the same. And the samples from R do not
have any
2012 Oct 26
1
Openbugs- Array Index
Hi,
I'm working on the codes below however every time I run them when they get
to OpenBUGS I keep getting the error message: array index is greater than
array upper bound for hab.
Any help would be greatly appreciated,
Suzie
Codes:
ungulate <- read.csv(file.choose ()) #ungulate
ungulate <-
as.matrix(ungulate);colnames(ungulate)<-NULL;rownames(ungulate)<-NULL
2010 Dec 29
2
RGtk2 compilation problem
Dear All,
I am trying to compile&install the package "RGtk2" on my Ubuntu 10.04
box. I did not have problem with earlier versions, but with the new
version, I got the following error message :
-------------------------------------------------------------------------------------------------
* installing *source* package ?RGtk2? ...
checking for pkg-config... /usr/bin/pkg-config