similar to: Lattice bwplot(): Conditioning on one factor

I don't find how to do what I need to do in Dalgaard or 'R Cookbook', so I'm asking here. I have a data frame with water chemistry data and I want to start exploring these data. There are three factors (site, date, chemical) associated with each measurement. The data frame looks like this: > summary(chemdata) site_id.sample_date.param.quant

Hello I am trying to fit a REML to some soil mineral data which has been collected over the time period 1999 - 2004. I want to know if the 19 different treatments imposed, differ in terms of their soil mineral content. A tree model of the data has shown differences between the treatments can be attributed to the Magnesium, Potassium and organic matter content of the soil, with Magnesium being the

#is there a way to get NA in the table of descriptive statistics instead of the function stopping Thank you in advance #data x.f <- structure(list(Site = structure(c(9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L), .Label = c("BC", "HC", "RM119", "RM148", "RM179", "RM185",

Hi all, I used bwplot in lattice to create a 6-panel boxplot grouped by a conditioning variable (param) that displays concentration (conc) in response to treatment (trtmnt). Here is the functional part of my code followed by my three questions: library(lattice); ww<-read.csv(file="c:/Rdata/lattice_boxplot_prep.csv",header=TRUE,sep=","); attach(ww);

Can anyone point me to examples with R code where bwplot in lattice is used to order the boxes in ascending order? I have found the following discussion and it partly works. But, I have a conditioning variable, so my example is more like bwplot(var1 ~ var2|condition, dat) Th example in the discussion below works only when there is not a conditioning variable as far as I can tell. I can tweak the

Hello, I am trying to use "bwplot" to display whisker boxes according to some conditioning factors ("age" has two values 1/2). I get the following messages: > library(trellis) > bwplot(dvk95~age|site*season,panel=function(x,y){panel.bwplot(x,y)}) Error in tapply(1:0, structure(list(INDICES = numeric(0)), .Names = "INDICES"), : arguments must have

Hi, Is there some alternative to the 'groups' argument in lattice's bwplot function for boxplots? Say in the example below: bwplot(yield ~ site | year, data = barley) you want to have two side by side boxplots per site, corresponding to each year in the barley data frame. Ideally, the space between boxplots of the same site should be smaller than that between boxplots of different

Dear Colleagues, I am attempting to develop an optimization routine for a river suspended sediment mixing model. I have Calcium and Magnesium concentrations (%) for sediments from 4 potential source areas (Topsoil, Channel Banks, Roads, Drains) and I want to work out, based on the suspended sediment calcium and magnesium concentrations, what are the optimal contributions from each source area to

I apologize if this is somewhere in the archives, but I can't seem to find a solution to this question. I've been trying to plot a bwplot: print( bwplot( n.pareto ~ as.factor(gen) | mut.rate * n.pop, data=p6, horizontal=FALSE, box.ratio=0.75, cex=0.6, xlim=c(-1,51), ylim=c(-1,500),

This is my first excursion into using reshape2 and I want to ensure that the melt() function call is syntactically correct. The unmodifed data frame is organized this way: head(tds.anal) site sampdate param quant 1 UDS-O 2006-12-06 TDS 10800 4 STC-FS 1996-06-14 Cond 280 7 UDS-O 2007-10-04 Mg 1620 9 UDS-O 2007-10-04 SO4 7580 19 JCM-10B 2007-06-21 Ca 79 20

A conditioning factor for bwplot() is the stream name. There are 17 streams so each panel is comparatively small and the names in the panel header are truncated at both ends. I would like to wrap the names on two lines for each panel but do not see if this can be done when I look at the online docs (?bwplot) or the Lattice book. Is there a way to fit long strings as headers with multiple panels on

Data frame has this structure: 'data.frame': 11169 obs. of 4 variables: $ stream : Factor w/ 37 levels "Burns","CIL",..: 1 1 1 1 1 1 1 1 1 1 ... $ sampdate: Date, format: "1987-07-23" "1987-09-17" ... $ param : Factor w/ 8 levels "As","Ca","Cl",..: 1 1 1 1 1 1 1 1 1 1 ... $ quant : num 0.01 0.01 0.01 0.01

Thanks to David's help I subset my large data set and produced a smaller one for a single stream and 7 factors of interest. The structure of this data frame is: str(burns.tds.anal) 'data.frame': 718 obs. of 4 variables: $ site : Factor w/ 143 levels "BC-0.5","BC-1",..: 1 1 4 6 4 4 4 5 5 5 $ sampdate: Date, format: "1996-06-02"

Inspired by colouring the dots of box-whisker plots I am trying to also fill the boxes (rectangles) with different colours. This seems not to work as I expected. Looking at the help page of panel.bwplot it says: 'fill - color to fill the boxplot'. Obviously it is only intended to fill all boxes with only one colour? Nevertheless the following example shows, that 'fill' from

I want to turn off selected axes in bwplot. I would like to only have the bottom axis drawn, with the others off. I have a series of bwplots that I want on one device, like this: p1<-bwplot(x1,box.ratio=.1) p2<-bwplot(x2,box.ratio=.1) ... print(p1,position=c(0,.8,1,1),more=T) print(p2,position=c(0,.6,1,.8),more=T) ... I know about the panel functions panel.bwplot() and panel.axis(), but

Dear r-helpers, tst <- data.frame(as.numeric(x <- 1:20), f <- rep(c('hi','lo'), times = 10)) with(tst, bwplot(f ~ x, panel = function(x, y){panel.bwplot(x, y, pch = '|', stats = boxplot.stats, fill = 8, varwidth = T)})) I can't figure out from the documentation how to tell stats that I would like to see notches or (even bands). Here is what I've

Try factor(vec2) in your bwplot() call. -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch]On Behalf Of Ernesto Jardim Sent: Friday, July 09, 2004 9:41 AM To: Mailing List R Subject: [R] Problem with bwplot Hi, I'm ploting some box-and-whisker plots with bwplot but I'm not getting any box-and-whiskers ... just dots.

RenE J.V. Bertin wrote: > Hello, and (somewhat belated) best wishes for 2005. > > Can one order not to draw outliers in bwplot, or at least exclude them from the vertical axis scaling? If so, how (or what doc do I need to consult)? > The options that have this effect in boxplot() do not appear to have any effect with bwplot (although outline=FALSE in boxplot does *not* change the

Hi, I'm trying to produce colored boxplots using lattice::bwplot function. I need to plot each boxplot in the panel with a specific color. Naturally I used a vector of colors and expected to see colored boxplots. Although the boxplots were colored, the color of whiskers and the boxes do not match. Here is an example: d = data.frame(y = rnorm(100), x=1:4) box.color <-

Hi, I'm trying to produce colored boxplots using lattice::bwplot function. I need to plot each boxplot in the panel with a specific color. Naturally I used a vector of colors and expected to see colored boxplots. Although the boxplots were colored, the color of whiskers and the boxes do not match. Here is an example: d = data.frame(y = rnorm(100), x=1:4) box.color <-