similar to: Compiling R2.15.1 on ubuntu with x86-64 architecture and shared library

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran

I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran install.packages(listofpackages). Now I have 352 packages on the new machine but several very common packages (like much of the

Per the suggestion of this list when I posted on the r-help list, I have gone to cran, linux downloads and read the read me file to try and install the binary for R 2.15.1 on my ubuntu AMD64 machine. I added to my sources.list the deb http:\\cran.wustl.edu\bin\linux\ubuntu precise main . Then I ran sudo apt-get update and sudo apt-get install r-base. The system promptly installs R 2.14.1 . I

I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. [1] "/tmp/RtmpMM6iC1/R.INSTALLc5ca415e4310/stringi" Browse[2]> dir(new) [1] "DESCRIPTION" "INSTALL" "LICENSE"

On 22/06/2017 3:42 PM, Conklin, Mike (GfK) wrote: > Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. I believe that is a locally defined function, which means you can set a breakpoint within it but only if R is compiled with source info, or you can manually call

On 22/06/2017 11:15 AM, Conklin, Mike (GfK) wrote: > Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. > I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All

Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. So, made a tempfunc that was a copy of tools:::.install_packages and edited the file_test("-x","configure") line to return a TRUE now I get a Permission Denied error (even if I run as root) >

>>>>> David Winsemius <dwinsemius at comcast.net> >>>>> on Wed, 21 Jun 2017 18:04:13 -0700 writes: >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: >> >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat

The "configure exists but is not executable" problem is somewhat common on Windows, because there's usually no such thing as an executable bit there. (Cygwin does something to fake one, but Windows generally doesn't.) If you create a tarball there by default you get no executable bits marked in it. For a long time, R CMD build has dealt with this issue by using the

On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. I don't know what is causing this bug. Perhaps a Linux user can reproduce it and fix it. Here's what I see:

I am trying to use a shiny app to update records in an sqlite database. I keep running into the following error: unable to find an inherited method for function 'dbSendQuery' for signature '"src_dbi", "character"' The query I am trying to send is: [1] "update kpquestions set mrisupercat = 'Demographics - Respondent' , set mricategory =

Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All result in the same "configure is not executable" result.

I had the same thought in the shower this morning but I was disappointed to find that SElinux was disabled on the system. My next step will be to install a previous version of R on the system. My problem is that I am planning a shiny server installation and at least half of the apps on the current system depend on these libraries that will not install. -- W. Michael Conklin EVP Marketing &

Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. > > I don't know what is causing this bug. Perhaps a Linux user can

So apparently (being a linux novice) I didn't realize it was insufficient to simply have the file marked as executable. It turns out the default TMP directory on my machine is mounted with a noexec flag so no files in that directory are allowed to be executed. The solution is to set an environment variable TMPDIR=some new directory I created (eg. /home/myusername/tmp) Then R uses that

Is this a SPARC system? On at least some SPARC systems, the "long double" type in C is implemented very slowly in software, and it seems that it is used for the sums done when calculating standard deviations with "sd". Radford Neal > Date: Wed, 8 Aug 2012 18:55:37 -0500 > From: "Eberle, Anthony" <aeber at allstate.com> > To: <r-devel at

I have a question about building R (2.15.1) from source on a Solaris 10 64bit virtual server with 2 cores and 16GB memory that is running on an Oracle T4 server. Based on several tests I have done this configuration has been several orders of magnitude slower than any other configuration I've tested. A simple test of some code to calculate the standard deviation 10000 times (simple code to

Hi everyone, this is my first time using r and I think I'm overlooking something small and I just need some help seeing it. I have a file in notepad that I need to read into r. > ceosalary<-read.table(file="C:/Users/mz106_010/Desktop/ceosalary.csv",header > = TRUE,sep="\t") Error in file(file, "rt") : cannot open the connection In addition: Warning

Hello Rxperts.. I have a peculiar situation.. XML library is not available with R2.15.1 whereas I was able to install it with R version 2.13.1. Would highly appreciate your suggestions. I am now trying to see if XML works with previous versions of R. Thanks, Santosh [[alternative HTML version deleted]]

I would like to be able to submit a list of URLs of various webpages and extract the "content" i.e. not the mark-up of those pages. I can find plenty of examples in the XML library of extracting links from pages but I cannot seem to find a way to extract the text. Any help would be greatly appreciated - I will not know the structure of the URLs I would submit in advance. Any