similar to: p-values in agricolae pearson correlation

Dear list, I'd like to use path.analysis in the package agricolae in batch format on many files, retrieving the path coefficients for each run and appending them to a table. I don't see any posts in the help files about this package or the path.analysis package. I've tried creating an object out of the call to path.analysis, but no matter what I try, the function automatically prints

Dear all, W2k, R 2.5.1 I am trying out the AMMI function in the agricolae package, to analyse the dependence of environment for a certain cultivar. The function responds to four basic variables: ENV Environment GEN Genotype REP Replication Y Response My question concerns the 'REP' term. When I normally do an analysis of variance, the replication would refer to repeated observations

Cada vez que intento cargar el paquete "agricolae" me da el siguiente mensaje: Error: package or namespace load failed for 'agricolae' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called 'spData' He intentado todo actualizar los paquetes, volverlos a instalar pero no hay forma. Si sabeis la solución ?? Un saludo. Juan

Hi there, I am doing multiple comparisons for data that is not normally distributed. For this purpose I tried both functions kruskal{agricolae} and kruskalmc{pgirmess}. It confuses me that these functions do not yield the same results although they are doing the same thing, don't they? Can anyone tell my why this happens and which function I can trust? kruskalmc() tells me that there are no

Hola a todos Estoy trabajando con el package agricolae para realizar pruebas de medias y obtengo un error que no entiendo al trabajar las interacciones. Os explico: Poseo un Diseño Completamente al Azar para el arreglo de tratamientos factorial de la forma 2*2*4. El modelo consta de 6228 observaciones, el esquema para el anova es: A= 2 niveles={2,5} B= 4 niveles={F1,F2,F3,F4} C= 2

Hello everybody, I use the sweetpotato database included in R package: data(sweetpotato) This dataset contains two variables: yield(continous variable) and virus(factor variable). Due to Levene test is significant I cannot assume homogeneity of variances and I apply Welch test in R instead of one-way ANOVA followed by Tukey posthoc. Nevertheless, the problems come from when I apply posthoc

Hi, I did the analysis of variance of a split-plot and the effect of treatment was significant. I would like compare treatment means using Tukey. I can't extract the mean square to apply HSD.test to use in agricolae package. anava = aov(ganhos ~ Blocos + Trat*Supl + Error(Blocos/Trat)) names(anava) summary(anava) require(agricolae) HSD.test(ganhos, Trat, df, MSerror, alpha = 0.05)

Hi, I need to determinate HSD value from a matrix like that Thesis Days A1 Cx 0 66.07 Cx 0 60.24 Cx 0 42.86 Tw 0 66.07 Tw 0 60.24 Tw 0 42.86 Aa 0 66.07 Aa 0 60.24 Aa 0 42.86 Qe 0 66.07 Qe 0 60.24 Qe 0 42.86 Cx 56 310.86 Cx 56 223.17 Cx 56 186.77 Tw 56 149.42 Tw 56 127.75 Tw 56 138.59 Aa 56 130.24 Aa 56 214.83 Aa 56 137.95 Qe 56 186.64 Qe 56 189.09 Qe 56 187.87 this is my script

? Hello people!! I'm trying to make a statistical analysis of stability through to package 'Agricolae', and procedure 'stability.par', but I don't get conclude the analysis. The problem is in my data set, that have missing value, and I didn't manage interpret the 'NA' used to assign missing value. Someone have any suggestion to solve the

Hola Javier, gracias por contestar tan rapido (tarde en la noche) ... olvide decir que, obviamente, he revisado la internet buscando y no encuentro ni siquiera la tabla de analisis de varianza del diseño ... habia revisado el paquete agricolae porque este trae diseños parecidos pero no exactamente lo que necesito. Sigo buscando, muchas gracias, Eric. On 29/04/15 22:57,

Hi, I have a matrix of results of multiple 2x2 chi^2 tests, non- significant tests are marked as TRUE. Is there a function for grouping those variables in a similar way LSD.test from agricolae library does? I reviewed LSD.test's source but it's not helpful for me. This is my matrix: [,1] [,2] [,3] [,4] [,5] [,6] [,7] 1 TRUE FALSE TRUE TRUE TRUE FALSE TRUE 2 FALSE TRUE

Hello, I am really new to R and it's still a challenge to me. Currently I'm working on my Master's Thesis. My supervisor works with SAS and is not familiar with R at all. I want to run an Anova, a tukey-test and as a result I want to have the tukey-grouping ( something like A - AB - B) I came across the HSD.test in the agricolae-package, but... unfortunately I do not get an output

Hello, My boss wants me to do a Duncan's test, which is under the agricolae package. Unfortunately I am not versed enough in R to run my data. I have 7 subspecies of deer mouse for which I have 23 measurements which are my variables of interest. I have run an ANOVA for each of the set of subspecies and variables, my data look like this: subspecies WMF 1 rowleyi 2.50 2 rowleyi 2.30

Genial !! Gracias Carlos, voy a leer la vignette. A todo esto, alguien se acuerda de esas paginas para buscar paquetes y funciones de R ? Se que una estaba en CRAN, pero las otras tambien eran muy buenas porque las use un par de veces, pero no las puedo encontrar en los mails de la lista. Saludos y gracias, eric. On 30/04/15 09:22, Carlos Ortega wrote: > Hola, > >

Hi Everyone, When i try to install a package using > install.packages("agricolae") --- Please select a CRAN mirror for use in this session --- | The cursor keeps blinking i dont get a popup menu to choose a CRAN mirror? Is it due to my proxy server settings? I tried to echo $http_proxy , it doesnt carry any proxy , its blank. Please help me. Thanks, Sushil. [[alternative

Good evenings. I am a novice in R and I have a big problem updating and installing packages inside R in Ubuntu 10.10 I followed the instructions in http://cran.r-project.org/bin/linux/debian/ : *Added a new repository in Ubuntu : http://cran-r.c3sl.ufpr.br/bin/linux/ubuntu maverick/ *update the r-base and r-base-dev packages *Enter R with "sudo" The R version is right [R version

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Hi there, I am trying to run LSD.test(model) I used the following commands: attach(model) m1<- glm(ttl.m ~ site+year, family=quasipoisson, data= model) df<-df.residual(m1) MSerror<-deviance(m1)/df The following command did not work: comparison<- LSD.test (ttl.m, site+year, df, MSerror, alpha = 0.05, group=FALSE) I get an error message: Error: could not find function

Dear all! W2k, R 2.5.1 I am working with an ongoing malting barley variety evaluation within Sweden. The structure is 25 cultivars tested each year at four sites, in field trials with three replicates and 'lattice' structure (the replicates are divided into five sub blocks in a structured way). As we are normally keeping around 15 varieties from each year to the next, and take in 10 new

Estimados, tengo que analizar un experimento que fue ejecutado bajo el diseño strip strip plot, lo que es bastante infrecuente al menos en mi area, y no quisiera hacerlo a mano. Me pregunto si en R existira algun paquete que ejecute el analisis de varianza de este tipo de experimentos. Recuerdo que un par de veces se han dado aqui paginas para consultar acerca de paquetes, funciones y esas