similar to: --enable-R-shlib and external BLAS/LAPACK libraries

A couple of years ago I noted that using the configure switch --enable-R-shlib when buildig R made configure ignore any specified external LAPACK library (I cannot recall if also the BLAS specification was ignored) and use the internal one insted. I asked why, and was told it was intentional. Now, with R 2.15.1, I see that it at least appears that this is no longer the case. I've run

On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):

Dear R-Users, I am having some trouble running an R extension on our cluster (linux). I call C++ code in which I use a) the Scythe Statistical Library and b) OpenMP. Most of the jobs run without a problem, but some arbitrary jobs throw an exception of the kind printed below while running in a parallel loop. The behavior is to me not reproducible, although at every run of 729 Jobs it at least

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure

On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > After a few days of reading and headache, I finally gave a try at > building R from source with Intel MKL and ICC. Documentation and posts > on this topic are rather incomplete, sometime fantasist et do not give > much explanations about configure options. > As I am not sure if mine is

On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote: > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: >> > After a few days of reading and headache, I finally gave a try at >> > building R from source with Intel MKL and ICC. Documentation

On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote: > On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote: > > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > >> > After a few days of reading and headache, I finally gave a try at

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

Hi I have problems with Samba and hope some of you can help me. Below if I have add the error messages that are relevant. [root at roskilde mosek]# emacs /var/log/samba/log.172.16.0.108 File Edit Options Buffers Tools Help [2014/02/06 10:18:29.562405, 0] smbd/oplock.c:330(oplock_timeout_handler) Oplock break failed for file windows/intel/Composer-XE-2013.198/Documentation/csupport.txt --

I am installing R 2.15.1 onto RHEL 6, using gcc 4.7.0 with Intel MKL 10.3.7 and the following environment: export BLAS_LIBS="-Wl,--start-group /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_gf_lp64.a /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_sequential.a /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_core.a -Wl,--end-group -lpthread" export LAPACK_LIBS="-Wl,--start-group

On our Scientific Linux 6, there is gcc --version gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) and later version (a symbolic at HOME to the system directory), export MKL=/home/jhz22/11.3.3.210/mkl export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64 ./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \ --enable-R-shlib --with-lapack \

There is nothing here indicating any kind of error, so no way to give any insights .... And please do follow the posting guide, including not posting HTML. FWIW, I have tested R 3.4.0 RC (sic) with MKL 11.3, which is later than your 2013 ... (on x86_64 Fedora 24). On 20/04/2017 10:39, jing hua zhao wrote: > Dear R-developers, > > > I would appreciate any insights over compiling R

Dear R-developers, I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows, ./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib I have used, export MKL_NUM_THREADS=15 export

Hi folks, if you want to use MKL (the fast BLAS I have tested on my Thinkpad T410) with the R 2.14.0 built as Debian/Ubuntu packages available on CRAN mirror, the following tricks may works for without some known side-effects (likes openmp breaking issues), you may try to build your own libblas.so.3gf.0 with following command: $ gfortran -L/opt/intel/lib/intel64 -liomp5

I have built rsync on IA64 using Intel's 'icc' compiler and can run the rsync executable interactively but when attempting to run under 'crontab' I get the following error: + /home/horace/mccssmb2/src/rsync-2.6.9/rsync -z --partial -v --progress --recursive --stats --times --links --exclude-from=/project/horace/mcc101/.rsync-EXCLUDE --timeout=1200 /project/horace/mcc101

Hello, I compiled R-2.15.2 with linux intel compilers (see below). when I execute some R code on a // 4 proc x 4 cores // server (export MKL_NUM_THREADS = 16) very often I have the situations where only one processor (4 cores) is active instead of 4 (16 cores) ! do you know this fact depends on what ? thank you ! P.S. many functions of R are single-threaded, is there a simple way to make them

Hi, Is is possible via clang plugin (clang configuration) to add 4 nops after ret instruction on Intel64? Thanks, Alexei -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20190807/229ecbf4/attachment.html>

Hi Paul, We've been through this process ourselves for the Revolution R Open project. There are a number of pitfalls to avoid, but you can take a look at how we achieved it in the build scripts at: https://github.com/RevolutionAnalytics/RRO There are also some very useful notes in the R Installation guide: https://cran.r-project.org/doc/manuals/r-release/R-admin.html#BLAS Most packages do

Hi all, I have the issue: icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp -c eval.c -o eval.o arithmetic.c(66): warning #274: declaration is not visible outside of function int matherr(struct exception *exc) ^