similar to: triangular matrices input/output

I have output from a program which produces a distance matrix I want to read into a clustering program in R. The output is a .txt file and is 'almost' lower triangular in the sense that it is just the triangle below the diagonal. So for example a 4-by-4 distance matrix appears as, 1 2 3 4 5 6 i.e. it looks like a lower triangular of a 3-by3. I thought I might be able

Hello! I'm trying to build a lower triangular matrix (with zeros in the diagonal) from a particular dataframe. The matrix I have to construct has 203 rows and 203 columns and that makes 20503 values to be included within (that's why I can't do it manually). To illustrate the dataframe I have, I'll give you an example of a dataframe and matrix with dimensions 6x6 (to make it

Hi, suppose that we have a triangular upper matrix A test <- matrix(ncol = 4, nrow = 4) test[1, ] <- c(NA,1,1,1) test[2, ] <- c(NA,NA,1,1) test[3, ] <- c(NA,NA,NA,1) test[4, ] <- c(NA,NA,NA,NA) I know how quickly set diagonal value diag(test) <- 1. But how quickly set down value i.e. matrix is symmetrical? Is there in r project any quickly function? Thanks, Best Marcin

The code below create an nxn upper triangular matrix of one's. I'm stuck on finding a more efficient vectorized way - Thanks. --Dale n <- 9 data <- matrix(data=NA, nrow=n, ncol=n) data for (i in 1:n) { data[,i] <- c(rep(1,i), rep(0,n-i)) } data

Given a vector;> ab = seq(0.5,1, by=0.1)> ab[1] 0.5 0.6 0.7 0.8 0.9 1.0 The euclidean distance between the vector elements is given by the lower triangular matrix > dd1 = dist(ab,"euclidean")> dd1    1   2   3   4   52 0.1                3 0.2 0.1            4 0.3 0.2 0.1        5 0.4 0.3 0.2 0.1    6 0.5 0.4 0.3 0.2 0.1 Convert the lower triangular matrix to a full

Hello, I want to create a triangular matrix and only keep the lower triangle entries without having to allocate memory for the whole matrix, is there any way I can do something like  A<-matrix(data, nrow=50)  but for a triangular matrix? Thanks ERV [[alternative HTML version deleted]]

Hi I have two symmetrical distance matrices and want to compute the correlation coefficient between them (after turning them into vectors). Is there a way of selecting only the upper triangular part of each matrix, then convert this into a vector so I can compute the correlation? Many Thanks Eleni Rapsomaniki

Hi all, I am working on a filled contour plot which shows a triangular matrix data set (as shown below). Is there a possibilty to draw a triangular filled contour in a equilateral triangle (like a ternary plot)? Thanks in advance Johannes http://n4.nabble.com/file/n1557386/Bild3.png -- View this message in context: http://n4.nabble.com/Triangular-filled-contour-plot-tp1557386p1557386.html

Given a vector;> ab = seq(0.5,1, by=0.1)> ab[1] 0.5 0.6 0.7 0.8 0.9 1.0 The euclidean distance between the vector elements is given by the lower triangular matrix > dd1 = dist(ab,"euclidean")> dd1    1   2   3   4   52 0.1                3 0.2 0.1            4 0.3 0.2 0.1        5 0.4 0.3 0.2 0.1    6 0.5 0.4 0.3 0.2 0.1 Convert the lower triangular matrix to a full

Hi, I'm trying to use a similarity matrix (triangular) as input for pam() or fanny() clustering algorithms. The problem is that this algorithms can only accept a dissimilarity matrix, normally generated by daisy(). However, daisy only accept 'data matrix or dataframe. Dissimilarities will be computed between the rows of x'. Is there any way to say to that your data are already a

Hello, I am trying to get fitted/estimated values using kernel regression and a triangular kernel. I have found packages that easily fit values from a kernel regression (e.g. ksmooth) but do not have a triangular distribution option, and density estimators that have triangular distribution options that I can't seem to use to produce estimated values (e.g. density). Any help is appreciated.

Dear list, I will like to learn how to read a lower triangular matrix in R. The input file *.txt have the following format: A B C D E A 0 B 1 0 C 2 5 0 D 3 6 8 0 E 4 7 9 10 0 How this can be done? Thanks in advance for your help Rog??rio

Hi, I would like to generate below triangular matrix for some a. 0 0 0 0 0 0 1 0 0 0 0 0 a 1 0 0 0 0 a^2 a 1 0 0 0 a^3 a^2 a 1 0 0 a^4 a^3 a^2 a 1 0 What's an efficient way to do this? (this matrix being KxK, K very large) Thanks Zava -------------------------------------------------------- This is not an offer (or solicitation of an offer) to buy/se...{{dropped}}

How I make the below matrix | a^0 0 0 ... 0 | | a^1 a^0 0 ... 0 | | a^2 a^1 a^0 ... 0 | | . | | . | | . | | a^n a^(n-1) a^(n-2) ... a^0 | with no loops, where "a" is a constant? ======================================================================== C?zar de Freitas Depto. de Estat?stica - UFPE Recife - Pernambuco - Brasil

Hello, I have some xy data which clearly shows a non-monotonic, peaked triangular trend. You can get an idea of what it looks like with: x<-1:20 y<-c(2*x[1:10]+1,-2*x[11:20]+42) I've tried fitting a quadratic, but it just doesn't the data-structure with the break point adequately. Is there anyway to fit a triangular or 'tent' function to my data in R? Some sample code

Hi Has anyone tried to fit a thin plate spine to a triangular plot before? I'm having trouble working out a piece of code to make it possible with three axes. I have done it before with two axes. I've found a package I prefer that makes triangular plots (plotrix) using the triax.plot() function. An example of some data and the plot follows: graph.data<-data.frame(a=c(9,6.2,

Hi, I am trying to create a triangular plot to show the 'composition' of a set of items with three variables (historically the percent sand, silt and clay in soil). So far I have tried the 'soil texture triangle plot' in the package plotrix and the 'ternary or triangular plots' in the package cwhtool (cwhmisc). Both have strengths and weaknesses, but neither has a

Hola! I have data in the form of a symmetric distance matrix, in the file I have recorded only the upper triangular part, with diagonal. The matrix is 21x21, and the file have row and col names, and some other information. I am trying to read with the following code (I tried many variations on it, but all give the same error). The items in the data file is delimited by white space. (Part

Hi all, I am using the 'gaussHermite' function from the 'pracma' library ############ CODES ########### library(pracma) cc=gaussHermite(10) cc$x^2 cc$x^5 cc$x^4 ############ CODES ########### as far so good. However, it does NOT work for any NON integer values, say ############ CODES ########### cc$x^(2.5) cc$x^(-2.5) ############ CODES ########### But just think about it

Hi, I have a comma separated file with element names in first column like shown below : Name_1,0 Name_2,0.8878,0 Name_3,0.6777,0.7643,0 Name_4,0.9844,0.1234,0.1414,0 Original data is a 10000x10000 symmetric matrix (600 MB). To reduce file size, I have minimized matrix to only lower triangle. Is there a (memory) efficient way to 1) read file 2) compute first and second principal components and