similar to: Plot

> regions = c('cortex', 'hippocampus', 'brain_stem', 'mid_brain', 'cerebellum') > mice = paste('mouse', 1:5, sep='') > for (n in c('Cu', 'Fe', 'Zn', 'Ca', 'Enzyme')) { + assign(n, as.data.frame(replicate(5, rnorm(5)))) + } > names(Cu) = names(Zn) = names(Fe) = names(Ca) = names(Enzyme) =

I can''t get my view to display the most recent parameters from an associated object in a view... here is a birds-eye of my app: I have two models, Ferms and Kinetics. Ferm has_many :kinetics, Kinetic belongs_to :ferm. Kinetic has the fields ferm_id, brix and temp. In my ferms/index view I have a table listing the attributes of each ferm instance. I would like to display the most recent

Dear all, d, d=1,...,10 is a day, h, h=1,...,24 is an hour and tt_dh(1),tt_dh(2),... is the arrival time of the 1st, 2nd etc client on day d during hour h. How can I make a double-indexed list ldh (indices are d and h) such that ldh[[d,h]] gives me arrival times? Many thanks, Remi [[alternative HTML version deleted]]

I am working on a site which tracks "ferms" (read: widgets)... each ferm belongs to one company, one company can have many ferms. One company can also have many users with different access priveliges, and company administrators would invite other users to access the company''s site. Also, one user can belong to different companies and perhaps have different access at each

Hi, Is there any way to use R to present t test results for three groups of experiments, each of which involves several parallel experiment series with groups of control vs treated. I would like to present the average fold change of the experimental parameter (concentration of enzymes) as bars with standard error and the p value above the bar. So, there should be two groups (control vs

Hello You must add first: vlan (tagged) to eth2 eth2 interface is not tagged by default and not know vlan-s . It is like a cisco if you have 24 ports in cisco by default all ports are in vlan1. if you want to do trunk (with vlans) you myst add (vlans) to this ports (tagged or untagged) So you can compare that all interfaces in linux by default are in one vlan(but not tagged). (only for

https://bugzilla.netfilter.org/show_bug.cgi?id=1434 Bug ID: 1434 Summary: Usability improvements, enabling creation of complex firewalls Product: nftables Version: unspecified Hardware: x86_64 OS: All Status: NEW Severity: enhancement Priority: P5 Component: nft

Hello everyone, I would like to parse very large xml files from MS/MS experiments and create R objects from their content. (By very large, I mean going up to 5-10Gb, although I am using a 'small' 40M file to test my code.) My first attempt at parsing the 40M file, using the XML package, took more than 2200 seconds and left me quite disappointed. I managed to cut that down to around 40

for the script, please kindly see the script below. At line 10 and line 13, my problems occurs. The first one is I try to retrieve the gene official name from a column of a table. The pattern of official name is something starting with gene_name. For detail problems, please see the according lines. Any suggestions are appreciated example of matching source (extract the Nnat, sometime it would

Hi, I have the following data file to be parsed and captured as a data frame: __DATA__ #GDS_ID GENE_NAME GENE_DESCRIPTION GENE_FUNCTION 1007_s_at | DDR1 | discoidin domain receptor tyrosine kinase 1 | protein-coding 1053_at | RFC2 | replication factor C (activator 1) 2, 40kDa | protein-coding 117_at | HSPA6 | heat shock 70kDa protein 6 (HSP70B') | protein-coding __END__ In particular it is

?s 11:46 de 16/04/2024, jing hua zhao escreveu: > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p > YWHAE,13:62129097_C_T,1433E,7.35 > YWHAE,4:72617557_T_TA,1433E,7.73 >

Gene names being misinterpreted by spreadsheet software (read.csv is no different) is a classic issue in bioinformatics. It seems like every practitioner ends up encountering this issue in due time. E.g. https://pubmed.ncbi.nlm.nih.gov/15214961/ https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1044-7 https://www.nature.com/articles/d41586-021-02211-4

What I am trying to do is use GUI function, traitr, and to call for a pdb file and save it and then display it. I want to call for it by taking it from the user and then displaying it on the screen. I am having problems with that. The line pdb <- read.pdb(""ProteinCode) where proteincode should be the name of the protein, for example 1ly2, but it always ends up being protein. My

Hello, >From smb.conf man page: "You may find that on some systems Samba will say "Unknown socket option" when you supply an option. This means you either incorrectly typed it or you need to add an include file to includes.h for your OS. If the latter is the case please send the patch to samba@samba.org <URL:mailto:samba@samba.org>." I'm exactly in that

Hi, Suppose I have the following tabular data: 1729_at | TRADD | TNFRSF1A-associated via death domain | protein-coding 1773_at | FNTB | farnesyltransferase, CAAX box, beta | protein-coding 177_at | PLD1 | phospholipase D1, phosphatidylcholine-specific | protein-coding What is the right separator used for read.table function? I tried this: dat <-

Hello, I'm suffering a estrange problem in a WinNT-Samba3 environment. I have two servers: WinNT4 (PDC of domain A-DOMAIN) and Samba3 (PDC of B-DOMAIN). A-DOMAIN and B-DOMAIN trust each other (I had followed the procedures described in HOWTO Chapter 16 successfully). The problem arises when I assign permission in WinNT server's folders (A-DOMAIN) for users in the Samba domain (B-DOMAIN).

My laboratory is measuring the abundance of various proteins in the blood from either healthy individuals or from individuals with various diseases. I would like to determine which proteins, if any, have significantly different abundances between the healthy and diseased individuals. Currently, one of my colleagues is performing an ANOVA on each protein with MS Excel. I would like to analyze

Comparing the Polyhedron 2005 benchmark results for gfortran from llvm-gcc-4.2 of April 7th, 2010 and September 18th, 2010 (from the rc2 2.8 release branch), we seem to be regressing in performance for this release.... ================================================================================ Date & Time : 7 Apr 2010 22:24:16 Test Name : llvm_gfortran_lin_p4 Compile Command :

With the case-insensitive file system patch from http://llvm.org/bugs/show_bug.cgi?id=9656#c15 applied to dragonegg 2.9, the following Polyhedron 2005 benchmarks are seen on x86_64-apple-darwin10 under gcc 4.5.3svn using the dragonegg plugin... ================================================================================ Date & Time : 8 Apr 2011 19:52:56 Test Name :

Hi all, I have thousands of strings like these ones: "1159_1; YP_177963; PPE FAMILY PROTEIN" "1100_13; SECRETED L-ALANINE DEHYDROGENASE ALD CAA15575" "1141_24; gi;2894249;emb;CAA17111.1; PROBABLE ISOCITRATE DEHYDROGENASE" and various others.. I'm interested to extract the code for the protein (in this example: YP_177963, CAA15575, CAA17111). I