similar to: Windows 7 and .libPaths()

Hi, I just installed R on a new windows 7 machine and am having a probelm with the default libraries. The default libraries are not what I want them to be so when i say install.packages("XXX") the packages don't install where I want them to. Ideally everything would install to the same location as the base packages. When I look at my library paths I get the following. >

High, on all of my computers the first entry in libPaths for root was /usr/lib64/R/library or /usr/lib/R/library. Now it change at one (lynx) anyway to root at lynx:/root(2)# R R version 2.12.1 (2010-12-16) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

Dear list, I?m using R embedded in another program (coded in tcl/tk) under Windows Vista. In this context I don?t launch Rgui.exe but rather Rtem.exe. Now I have a problem finding libraries not specifically installed as administrator (and which are not in the path ?program files? but in Contacts\Documents of the current user). To be precise, the user launching my tcl/tk program can?t find

Hi everyone, I’ve recently added a private library as a way to manage my R libraries. And I did this by simply copying my old library to a new folder and then linking this to R by setting my R_LIBS environmental variable in .Renviron. However I have run into a problem. When I update my packages it is not updating those that are current in the base R library. This means I can’t load

I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain R_LIBS_USER. I also noticed that R related variables are not in the system or user variables because I

Good day, I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." However, $ export R_LIBS=/users/stgrad/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor"

I want my local libraries to have priority over the system installed ones, which, as far as I can make out from help(".libPaths"), means they have to come first in that list (it doesn't actually_say_ so, but that seems to be the idea). We have R_LIBS_USER which looks made for specifying where I keep my own libraries. Unfortunately it comes last in .libPaths() [which appears to

Using: natty alpha-2 Could anyone englighten me (or point me to a self-enlightment page) as to why when installing R using: > apt-get install revolution-mkl r-revolution-revobase revolution-r r-base-core There are 4 library paths available (installed by default): > .libPaths() [1] "/usr/local/lib/R/site-library" "/usr/lib/R/site-library" [3]

Reproducible example: dir.create("test") .libPaths("test") install.packages("relations", type = "source") Fails with: ... * installing *source* package ?relations? ... ... ** testing if installed package can be loaded *** arch - i386 Error : package ?sets? required by ?relations? could not be found Error: loading failed Execution halted *** arch - x86_64

I'm not sure I follow what.the problem is. Are you trying to set R_LIBS_USER but R does not acknowledge it, or do you observe something in R that you didn't expect to be there and you are trying to figure out why that is / where that happens? Henrik On Sep 16, 2017 07:10, "Rene J Suarez-Soto" <rene.j.suarez at gmail.com> wrote: > I have a computer where R_LIBS_USER is

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

Hello, I am running R on a server that several people share. Previously we all had separate libraries for R. I have set up R so everyone on the server shares the same library and I downloaded the latest version of R and installed it on the main drive of our server in the "Program Files" folder (obvious enough). I changed the Environmental Variables in the advanced system setting so

?s 23:47 de 31/01/2024, Roy Mendelssohn - NOAA Federal via R-help escreveu: > HI All: > > We are trying to figure out a problem that is occurring with a package, and we need a non-NOAA person with a Windows computer with the latest R to test for us what is failing (but works on Macs and Linux from different sites). Part of the problem is there is an Akamai service in between that we

Good day, If the library path is changed with .libPaths, the command install.packages("/nb/dario/Biostrings_2.39.9.tar.gz", repos=NULL) fails with ** testing if installed package can be loaded Error : package ?S4Vectors? required by ?Biostrings? could not be found However, running library(S4Vectors) followed by sessionInfo() after the error shows that the package can indeed be

I have a computer where R_LIBS_USER is not found in libPaths. This is for Windows (x64). I ran R from the command line, RGui and RStudio and I get the same results. I also ran R --vanilla and I still get the discrepancy. The only thing I found interesting was that I also ran SET from the command line and the "R related variables" (e.g., R_HOME; R_LIBS_USER) are not there. Therefore

On Wed, Mar 18, 2020 at 8:04 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > > On 18 March 2020 at 19:19, Henrik Bengtsson wrote: > | AFAIU, 'R CMD check --as-cran' tries to hide any site and user package > | libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary > > What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly

AFAIU, 'R CMD check --as-cran' tries to hide any site and user package libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal library is still available for test scripts. Should I revise my assumptions, or is that intentional? The short version. Shouldn't: $ R_LIBS_USER='' Rscript --vanilla -e

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

Hi, I've just downloaded the latest R v2.5.0 alpha (2007-04-04 r41043) for WinXP. When I try to install a package R tries to install it to a no-name (empty name) directory (causing error downstream): RCMD INSTALL R.oo installing to '' FYI: Package install perfectly on R v2.4.1 patched, and did so also on earlier R v2.5.0 devel/alpha(?) versions. Current directory is: C:\tmp with

In R v2.12.2 patched (2011-03-13 r54787) and also in R v2.13.0 devel (2011-03-15 r54806), .libPaths() may return the multiple paths referring to the same "normalized" path name. Here is an example from Rterm --vanilla using R v2.12.2 patched: > paths <- .libPaths(c("C:/", "C:\\")) > paths [1] "C:/" [2] "C:\\" [3]