similar to: RC / methods package

I'm having trouble getting RMySQL to load. I was able to build it and install it (RMySQL_0.5-11.tar.gz). I was also able to build and install mysql-5.0.37. I've read many postings about this but have not found a mention of my particular problem (some closely related). I get the "unable to load shared library, no such file" error, but all the files do exist, RMySQL.so and

I don't use MySQL but I have seen messages like this before. They often have replies which indicate that you need to follow the instructions more closely. I suggest you search the list for these previous posts as I'm sure there is help there, somewhere! Tom > -----Original Message----- > From: Adriano von Sydow [mailto:pdasilva at xtra.co.nz] > Sent: Thursday, 10 March 2005 5:13

I am extending a DBI connection by setClass("TSPostgreSQLConnection", contains=c("PostgreSQLConnection","TSdbOptions")) but the first time I use this I am getting a warning when it tries to coerce the TSPostgreSQLConnection to a PostgreSQLConnection. After the first use the warning stops, but the first warning is causing me problems when I do automatic checks

(I am not sure if this is a bug or a request for a more understandable warning, or possible something obvious I should be posting on r-help.) I am trying to coerce an new class object to be a DBIConnection and it does not work the way I think it should: R version 2.5.1 (2007-06-27) ... > require("RMySQL") # or require("RSQLite") Loading required package: RMySQL Loading

It would be really nice if R warned you when packages had conflicting methods. For example (and this took me a couple of hours to track down), RMySQL and RPostgreSQL both define setMethod("print", "dbObjectId"), so that: library(RMySQL) getMethod("print", "dbObjectId") library(RPostgreSQL) getMethod("print", "dbObjectId") Obviously

Hello, I have trouble installing and loading the RMySQL package on OS X 2.8. The package seems to install from source fine (using R package manager from within the R environment). I have the following error when I try to load the package: loading package: RMySQL Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

hello, if i load the RSQLite package in addition to the RPostgreSQL package, i get various errors when trying to use RPostgreSQL functions. here is an example transcript showing one such error: ========================================================== R version 2.15.0 (2012-03-30) [...] > packageVersion('RPostgreSQL') [1] 0.3.2 > packageVersion('RSQLite') [1] 0.11.1

Dear list-member, I am currently developing a package with S4 classes. The NAMESPACE and DESCRIPTION is printed below. Within this package I have set a method "residuals" for two classes. In version 2.8.1 these two are reported whereas in R-Devel (2009-01-28 r47766). What have I missed? What has changed and how can I rectify the issue? Your help and pointers are welcome. For 2.8.1:

Dear R developers, I am having a slightly weird issue with a S4 method defined in my package adegenet 1.2-4, with R 2.11.0. As far as I know, the problem is new, and the code implementing the method has not changed for more than a year and worked well so far. The problem is the following. I define, in the package, a method "[" for the S4 class 'genind'. The method's

Running R2.4.0 on Apple Mac OS X 10.4.8, in Emacs ESS mode, and also R.app. In an attempt to learn a bit more about a particular method (geneNames in package affy) I invoked getMethods("geneNames") which produced geneNames methods, but not the one in affy (output below). I had to know the signature (AffyBatch) in order to find the method > getMethod("geneNames",

> biplot standardGeneric for "biplot" defined from package "stats" function (x, ...) standardGeneric("biplot") <environment: 0x0d4444d8> Methods may be defined for arguments: x Use showMethods("biplot") for currently available ones. > > > showMethods("biplot") Function: biplot (package stats) x="ANY"

(a new thread, on purpose) >>>>> "RobG" == Robert Gentleman <rgentlem at fhcrc.org> >>>>> on Mon, 27 Jul 2009 16:55:50 -0700 writes: RobG> Hi, I just committed a change to R-devel so that if RobG> debug is called on an S3 generic function, all methods RobG> will also automatically have debug turned on for them RobG>

I see as below, where getGeneric and getMethod imply a different signature; the signature is mode="any" for both cases in R version 3.2.3 Patched (2016-01-28 r70038)I don't know how to reproduce Jeff's error, though. > library(Matrix) > as.vector function (x, mode = "any") .Internal(as.vector(x, mode)) <bytecode: 0xe79f88> <environment:

Hi, I've been using the package "graph" in the BioConductor assortment and writing some functions based on its classes. My question is not specific to this package or BioConductor (I think), but it serves as a useful example. I recently wanted to look at the code for the function "edgeMatrix" for the class "graphNEL". Usually I would type > func.foo and

Dear list, I want to insert a recorde into a SQLite table by dbGetQuery(), but there is a problem when the value contains quotation mark. > dd<-data.frame(txt=c("having both ' and \" in character.","OK")) > library(RSQLite) Loading required package: DBI > con<-dbConnect(dbDriver("SQLite"),":memory:") >

Full_Name: Christian Hoffmann Version: 2.4.0 OS: Win 2000 Submission from: (NULL) (193.134.202.252) Database queries using the combination DBI + ROracle are handicapped by quirks in the pipeline between the textual representation of the query and the database engine Oracle. Comments and linefeed at start are interfering: dbGetQuery(conn, query): works: dbGetQuery(conn, "select *

Hi Philip, You've probably realized by now that R doesn't like column names that start with a number. If you try to access an R-dataframe column named 2B or 3B with the familiar "$" notation, you'll get an error: > library(DBI) > library(RSQLite) > con2 <- dbConnect(SQLite(), "~/R_Dir/lahmansbaseballdb.sqlite") > Hack12Batting <-

Hi there, When I extract data from SQLite to R, the data types (or modes) of the extracted data seems to be determined by the value of the first row. Please see the following example. When I put the missing values first, the column extracted is of the mode character. > str(dbGetQuery(sql.industry, + "select pya_var from annual_data3 + order by

This is really a feature of SQL, not R. SQL requires that you double quote column names that start with numbers, include spaces, etc., or that are SQL key words. E.g., > d <- data.frame(Order=c("sit","stay","heel"), Where=c("here","there","there"), From=c("me","me","you")) >

Hello, I'm new to R so this is probably a simple question for somebody. I have an RScript that reads a CSV on the disk using read.table(...). It then does a boxM test using that data. However, I'm now trying to load the same data via an SQL command, but I can't seem to get the data structure defined so R will like it -- using the included "iris" dataset. I've tried