similar to: Typo in NEWS: -as-cran should be --as-cran

On Sat, May 9, 2015 at 12:55 AM, peter dalgaard <pdalgd at gmail.com> wrote: > >> On 09 May 2015, at 02:53 , Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: >> >> Hi, >> >> I spotted what looks like another(*) mistake in 'R Language >> Definition' on how subsetting should work. In Section 'Indexing >> matrices and

Hi, I spotted what looks like another(*) mistake in 'R Language Definition' on how subsetting should work. In Section 'Indexing matrices and arrays' [http://cran.r-project.org/doc/manuals/r-release/R-lang.html#Indexing-matrices-and-arrays] one can read "Negative indices are not allowed in indexing matrices." but this is not true, e.g. > x <- matrix(1:12,

Hi, is it possible to have non-Sweave vignettes(*) in inst/doc/ be listed under 'Downloads' on CRAN package pages? For instance, in my R.rsp package I have a inst/doc/report.pdf (part of the source *.tar.gz) that is not detected/listed. The PDF is not based on a Sweave vignette but an *.tex.rsp vignette that is dynamically created via inst/doc/Makefile. It is listed (*) BTW, can the

In R-devel (2015-08-12 r69024), capture.output() incorrectly duplicates the last line unless it ends with a newline. I don't see this in R 3.2.2 RC (2015-08-13 r69049). It seems to have started fairily recently; I spotted this yesterday after starting to get errors in my R.utils check that use capture.output(), cf.

Does anyone know if it is possible to add a dictionary file of known words that becomes part of the *built* package to tell 'R CMD check --as-cran' not to report these words as misspelled. I want this dictionary to come with the *.tar.gz such that it will be available regardless where the package is checked. For instance, currently I get: * using log directory

Hi, I've just created: newEnvEval <- function(..., hash=FALSE, parent=parent.frame(), size=29L) { envir <- new.env(hash=hash, parent=parent, size=size); evalq(..., envir=envir); envir; } # newEnvEval() so that I can create an environment and assign objects to it in one go, e.g. env <- newEnvEval({ a <- 1; b <- 2; }); print(env$a); Does this already exists somewhere?

Aaaah ... and argh - I should have better not to post R question at midnight, especially when I know it forks the process and it's not using threads. Brain meltdown. (So, we'll proceed trying to use pthreads in matrixStats also for Windows). Sorry for the noise and thanks Kasper. Henrik On Aug 15, 2015 02:52, "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com> wrote:

This may have been asked before, but is there an elegant way to check whether an variable/argument passed to a function is a "parse tree" for an (unevaluated) expression or not, *without* evaluating it if not? Currently, I do various rather ad hoc eval()+substitute() tricks for this that most likely only work under certain circumstances. Ideally, I'm looking for a isParseTree()

**Maybe this bug needs to be understood further before applying the patch because patch is most likely also wrong** Because, from just looking at the expressions, I think neither the R 3.6.0 version: omittedSig <- omittedSig && (signature[omittedSig] != "missing") nor the patched version (I proposed): omittedSig <- omittedSig & (signature[omittedSig] !=

Hi, right now it is actually a bit tricky to locate and view the NEWS and the CHANGES files, especially if you are a beginning and don't even know that you are supposed to look for them. I'd like to recommend that links to (local) NEWS and CHANGES are added to the help.start() overview pages. help("NEWS")/help("CHANGE LOG") and help("CHANGES") could

On Windows there are a few 'pthreads' implementation, e.g. pthreads-w32 and winpthreads [https://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Using-pthreads]. We're thinking of giving them a try for the matrixStats package, and basic tests indicates it works, but since Windows pthreads are not used by core R (or?) I've got a little bit worried that we will face overwhelming

Is there a missing value constant defined for R_xlen_t, cf. NA_INTEGER (== R_NaInt == INT_MIN) for int(eger)? If not, is it correct to assume that missing values should be taken care/tested for before coercing from int or double? Thank you, Henrik

Henrik, If a minimal reprex is hard to construct, could you perhaps instrument your version of R to include a browser() call at the start of the else if(!all(signature[omittedSig] == "missing")) { branch, run the code that triggers the issue for you (and must hit that branch) and tell us what the "signature" and "omittedSig" objects look like at that point?

In Section 'Indexing by vectors' of 'R Language Definition' (http://cran.r-project.org/doc/manuals/r-release/R-lang.html#Indexing-by-vectors) it says: "Integer. All elements of i must have the same sign. If they are positive, the elements of x with those index numbers are selected. If i contains negative elements, all elements except those indicated are selected. If i is

I'd like to follow up on this one. It may be that I have misunderstood something, but on both R devel (2012-02-22 r58452) and R 2.14.1 patched (2012-02-18 r58394) I can't seem to avoid loading ~/.Rprofile when I run 'R CMD <cmd>', e.g. R CMD build. For me, the loading of ~/.Rprofile by 'R CMD' started a few weeks ago, and I haven't seen it before. More details

DISCLAIMER: I can not get this error with R --vanilla, so it only occurs when some other package is also loaded. I don't have time to find to narrow that down for a reproducible example, but I believe the following error in R 3.6.0: > Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > library(oligo) Error in omittedSig && (signature[omittedSig] !=

Thank you. To correct myself, I can indeed reproduce this with R --vanilla too. A reproducible example is: $ R --vanilla R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" ... > Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > loadNamespace("oligo") Error in omittedSig && (signature[omittedSig] != "missing") :

Another 1000 packages were added to CRAN, which took less than 7 months. Today (February 29, 2017), the Comprehensive R Archive Network (CRAN) [1] reports: ?Currently, the CRAN package repository features 8002 available packages.? The rate with which new packages are added to CRAN is increasing. In 2014-2015 we had 1000 packages added to CRAN in 355 days (2.8 per day), the following 1000

On May 13, 2015, at 2:28 PM, Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: > While at it: 'Makevars' is an R invention (i.e. documentation of it > is only available through the R docs), correct? /Henrik > Well, it's just a Makefile fragment that gets included along with the rest of the Makefiles, so for all practical purposes it's just a Makefile which

As kindly pointed out to me (oh my decaying gray matter), is.object() is better suited for this test; $ svn diff src/library/base/R/diag.R Index: src/library/base/R/diag.R =================================================================== --- src/library/base/R/diag.R (revision 68345) +++ src/library/base/R/diag.R (working copy) @@ -23,9 +23,11 @@ stop("'nrow' or