similar to: impute multilevel data in MICE

Dear list, Is there any one use MICE package deal with multilevel missing values here? I have a question about the 2lonly.pmm() and 2lonly.norm(), I get the following error quite often. Here is the code the error, could you give me some advice please? Am I using it in the right way? > ini=mice(bhrm,maxit=0) > pred=ini$pred > pred V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15

Dear R-users, Version V2.0 of the package mice is now available on CRAN for Windows, Linux and Apple users. Multivariate Imputation by Chained Equations (MICE) is the name of software for imputing incomplete multivariate data by Fully Conditional Specifcation (FCS). MICE V1.0 appeared in the year 2000 as an S-PLUS library, and in 2001 as an R package. MICE V1.0 introduced predictor selection,

Dear R-users, Version V2.0 of the package mice is now available on CRAN for Windows, Linux and Apple users. Multivariate Imputation by Chained Equations (MICE) is the name of software for imputing incomplete multivariate data by Fully Conditional Specifcation (FCS). MICE V1.0 appeared in the year 2000 as an S-PLUS library, and in 2001 as an R package. MICE V1.0 introduced predictor selection,

Hello! If I understand this listserve correctly, I can email this address to get help when I am struggling with code. If this is inaccurate, please let me know, and I will unsubscribe. I have been struggling with the same error message for a while, and I can't seem to get past it. Here is the issue: I am using a data set that uses -1:-9 to indicate various kinds of missing data. I changed

Hello everyone!I have a data set with missing observations that I am trying to impute. I am using MICE and I would like the imputed values to all be positive. I have two types of variables: prices (P1 to P136) and quantities (Q1 to Q136) and I also want the range of these two types to be different. Besides these variables. I am using the squeeze function but I am unable to set it such that I

Hi everyone, Does anyone here has experience using MICE to impute missing value? I am having problem to pool the imputed dataset for a MANOVA test, could you give me some advice please? Here is my code: > library(mice) >

Hello! I am trying to impute missing data and output the results of the imputation. My data set is called: MyData. I have a bunch of variables all of which start with Q20_ - and some of them have missing values. Here is what I've been doing: imputationmodel<-mice( MyData[ c (grep("Q20_", names(MyData)) ) ] ) multipledataset<-complete(imputationmodel,action="long")

Hello all, I am trying to impute some missing data using the mice package. The data set I am working with contains 125 variables (190 observations), involving both categorical and continuous data. Some of these variables are missing up to 30% of their data. I am running into a peculiar problem which is illustrated by the following example showing both the original data (blue) and the imputed

Hi I am unable to impute using the MICE command in R when imputing a binary variable using linear discriminant analysis. To illustrate my problem I have created a dataset, which consists of 1 continuous and 1 binary variable. The continuous variable is complete and the binary variable is partially observed. I am able to impute using the MICE command where the imputation methods is logistic

Hi all, I have a question about multiple imputation within the MICE package. I want to use passive imputation for my variable called X, because it is calculated out of multiple variables, namely Y, Z. Let's give an example with BMI. I know, that if I want to use passive imputation for BMI, I can use the following command: meth["BMI"] <- "~I(weight/(height/100)^2)"

Hi, I am working with a multiple-item questionnaire. I have previously done item-level multiple imputation using MICE in R and right now I am attempting duplicate-scale imputation based on the guidelines listed in Enders's applied missing data analysis book. I use MICE to do MI as it allows me to specify school effect as I am working with multilevel data; my respondents come from different

Dear R users I want to combine multiply imputed data-sets generated from mice to do classfication. However, I have various questions regarding the use of mice library. For example suppose I want to predict the class in this data.frame: data(nhanes) mydf=nhanes mydf$class="pos" mydf$class[sample(1:nrow(mydf), size=0.5*nrow(mydf))]="neg" mydf$class=factor(mydf$class) First I

I'm trying to use either mice or norm to perform multiple imputation to fill in some missing values in my data. The data has some missing values because of a chemical detection limit (so they are left censored). I'd like to use MI because I have several variables that are highly correlated. In SAS's proc MI, there is an option with which you can limit the imputed values that are

Hi all, How can I calculate the mean from several imputed data sets with the package mice? I know you can estimate regression parameters with, for example, lm and subsequently pool those parameters to get a point estimate using functions included in mice. But if I want to calculate the mean value of a variable over my multiple imputed data sets with fit <- with(data=imp, expr=mean(y)) and

Dear all, I am trying to impute data for a range of variables in my data set, of which unfortunately most variables have missing values, and some have quite a few. So I set up the predictor matrix to exclude certain variables (setting the relevant elements to zero) and then I run the imputation. This works fine if I use predictive mean matching for the continous variables in the data set. When I

I have fitted a proportional odds model, but would like to compare it to a continuation ratio model. However, I am unable to fit the CR model _including_ imputated data. I guess my troubles start with settuping the data for the CR model. Any hint is appreciated! Christian library(Hmisc) library(rms) library(mice) ## simulating data (taken from rms::residuals.lrm) set.seed(1) n <- 400 age

Hi I am trying to impute missing values for my data.frame. As I intend to use the complete data for prediction I am currently measuring the success of an imputation method by its resulting classification error in my training data. I have tried several approaches to replace missing values: - mean/median substitution - substitution by a value selected from the observed values of a variable - MLE

Hi, I am attempting to impute my data for missing values using the mice function. However everytime I run the function it freezes or lags. I have tried running it over night, and it still does not finish. I am working with 17000 observations across 32 variables. here is my code: imputed.data = mice(data, + m = 1, + diagnostics = F) Thank you in advance, Richard [[alternative HTML version

Sorry, I was not clear enough. The reason I want to use mice::mice() rather than library(mice); mice() is that I want to call it from my own package. But the reprex works from the command line as well, straight after launching R: mice::mice(airquality) #> Error in check.method(setup, data): The following functions were not found: mice.impute.pmm, mice.impute.pmm The mice.impute functions

Hi all, I am imputing missingness of  90 columns  in a  data frame using mice. But "mice" gives back :  Error in nnet.default(X, Y, w, mask = mask, size = 0, skip = TRUE, softmax = TRUE,  :   too many (1100) weights Any idea to solve this error is welcome, Anera [[alternative HTML version deleted]]