similar to: Overlapping a Plot with Dataframe

Dear List I am having problems to set text labels in a scatter plot. At some areas dots are close and labels overlap and texts cannot be read. I have too many dots to adjust this manually. Is there any function that will calculate the label offsets to avoid this overlapping problem? Thanks Ana -- Ana Conesa Bioinformatics and Genomics Department Centro de Investigaciones Principe Felipe

Hi, I wantto use 'mle' function in R on linux. As I see its been integrated into the stats4 package. Am I correct ? If yes, Can anyone suggest how to install the stats4 package to be able to run 'mle' function in R on linux ? Otherwise how to sort out this problem ? Thanks Himanshu [[alternative HTML version deleted]]

Hi all, I'm new to Centos, just moved here from Gentoo Linux. I have to install a server for bioinformatics purposes and I see that default yum repositories do not include any bioinformatics software (i.e. ncbi-toolkit, blat, and others). I'm googling a bit but I can't find a valuable solution: which is (or which are) the best repository I should add to have a satisfying list

Hello, I am running Kruskal-Walis test in R. When I try to save results using write.table it gives me the following error : Error in as.data.frame.default(x[[i]], optional = TRUE, stringsAsFactors = stringsAsFactors) : cannot coerce class "htest" into a data.frame The overall code is as follows : >data_file = read.table("~/DATA.dir/data_file.txt", header=T)

I am running R 2.0.0 on a SunOs 5.9 machine and using Oracle 8i.1.7.0.0 (enterprise edition) and when I try to load ROracle I receive the following error: "require(ROracle) Loading required package: ROracle Loading required package: DBI Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

Hi, I want to generate a heatmap for my data (in a matrix). However, the data has some missing values (represented as blank). I get the following errors (with the blanks and with blanks replaced by NA and including the option rm.na = TURE): > filename = "input_heatmap.txt" > g <- as.matrix(filedata) > fg <- rainbow(nrow(g), start=0, end=.3) > gg <-

Hi Folks, I need some large chunk of physical memory, so I allocate it early using alloc_bootmem_low_pages and use it later (akin to bigphysarea patch). The trouble I am having is the following. Suppose the virtual address for the memory area is 0xc14d6000. After xen_create_contiguous_region call, I do a virt_to_bus and the bus address comes out to be 0x18000000. So far so good. However,

Hey Xiaoming, Thanks for those source codes. Can you please explain what this llvm-memory-profiling.patch does ? Thanks, Himanshu On Wed, Sep 28, 2011 at 6:49 AM, xiaoming gu <xiaoming.gu at gmail.com> wrote: > Hi, Himanshu. I once wrote an LLVM IR-based memory profiling > pass. Basically, I followed the code for EdgeProfiling. The source code is > enclosed here, which worked

Hi, Can I execute a command basis on some criteria in puppet. For example, I would want to execute the following command svn up; /usr/local/apache/bin/apachectl restart only if "revision number of file on host = revision number of file on svn" i.e. "/usr/bin/svn info /usr/local/apache/conf/Web_Config/httpd.conf | grep Revision| cut -d: -f2| sed -e''s/

Hey guys, I have seen your interesting conversion. I am new for LLVM as well as clang compiler. I am going to use it now. it is quite difficult when someone starts it from scratch. But it is enjoyable and it is possible to familiarize with the environment by short time. Am gonna to use clang + llvm to generate AST from source code by using clang and to do high level transformation. Then I want to

This patch enables tracing VMEXIT/ENTRY for 64-bit systems (are there any 32-bit VT enabled systems out there?) Signed-off by Himanshu Raj (rhim.list@nosuchaddr.com) -- ------------------------------------------------------------------------- Himanshu Raj PhD Student, GaTech (www.cc.gatech.edu/~rhim) I prefer to receive attachments in an open, non-proprietary format.

Hi, I have been getting the below error for sometime now. Both master and client are using version 0.24.8. Output from /var/log/messages err: Could not call puppetmaster.getconfig: #<#<Class:0xb7b50a9c>: execution expired> err: Could not retrieve catalog: execution expired P.S- all of this was working absolutely fine and suddenly has started to misbehave. Regards, -- You

Hi, I have two model say- ZipCode < ActiveRecord::Base belongs_to :state_provinces end StateProvince < ActiveRecord::Base has_many :zip_codes end if I do @zip_code.update_atribute(:city, "My City") its giving Undefined method updated? for StateProvince if I remove belongs_to specifier in ZipCode class then it work fine. Any alternate solution?? Thanks -- Regards, Himanshu

The patch file is a diff file generated by "svn diff". It is about other modifications such as adding some lines to make files to make the added .c and .cpp files compiled. You may apply the patch file to LLVM source code by using a "patch" command or make the changes manually by reading the patch file. Xiaoming On Wed, Sep 28, 2011 at 6:05 AM, Himanshu Shekhar

Running the example in the documentation causes R to crash. dario at bioinfo:~$ R R version 3.0.3 (2014-03-06) -- "Warm Puppy" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or

Hello friends, I am trying to test NAS I/O performance over a network and trying to see the numbers for write and read speed. I have successfully configured and ran a lot of tests. However the numbers have not increased, I have reached a bottleneck. I tried playing around with the smb.conf file including all possible variations like, socket options = TCP_NODELAY SO_RCVBUF=(tried values like

Hey John, Thank you for the detailed reply. I tried to figure out myself which IR should I use for my purpose ( Clang's Abstract Syntax Tree (AST) or LLVM's SSA Intermediate Representation (IR). ), but couldn't really figure out which one to use. Here is what I m trying to do. Given any C/C++ program (like the one given below), I am trying to insert calls to some function, before and

We are running a benchmark that does single threaded 512 KB writes to a LUN on a CLARiiON storage array. The dual Xeon host (Dell 2650) with 4 GB of memory runs RHEL 4U3 We measured the write bandwidth for writes to the block device corresponding to the lun (e.g. /dev/sdb), a file in an ext2 filesystem and to a file in an ext3 file system. Write b/w for 512 KB writes Block device 312 MBps Ext2

Hello, I am getting to know how the Runtime Optimization feature of LLVM works and how I can use it. I want to know how I could print the results of any analysis and transformation pass. Say, I have a program written in c and I ran the edge-profiling pass onto it. Now I want to see the result. How could I do it? Also if I happen to change one of the passes inside folder

Hi all, I am new to R, but with the help I have received thus,I have already been able to work through a bunch of questions on my own in just a few days. I imagine my questions are relatively simple, but here she goes. 1) I am using a package where one of the objects generated represents X/Y coordinates for each observation. I have been able to plot my row names onto the graph using text()