similar to: loop for, error: obj type 'closure' not subsetable

How can I make sure the residual signal, after subtracting the trend extracted through some technique, is actually trend-free ? I would greatly appreciate any suggestion about some Stationarity tests. I'd like to make sure I have got the difference between ACF and PACF right. In the following I am citing some definitions. I would appreciate your thoughts. ACF(k) estimates the correlation

Hello, I am attending a course in Computational Statistics at ETH and in one of the assignments I am asked to prove that a time series is not autocorrelated using the R function "acf". I tried out the acf function with the given data, according to what I found here: http://landshape.org/enm/options-for-acf-in-r/ this test data does not look IID but rather shows some trends so how can I

I am guessing this is a very simple question, but this is only my second day with R so it is all still a bit imposing. I am trying to run an autocorrelation. I imported a CSV file, which has one column labeled "logistic". I ran the command: ACF(data$logistic,maxLag=10) However, I received the error: Error in UseMethod("ACF") : no applicable method for 'ACF'

Hi R users, where can I find the equations used by acf function to calculate autocorrelation? I think I misunderstand acf. Doesn't acf use following equation to calculate autocorrelation? [image: R(\tau) = \frac{\operatorname{E}[(X_t - \mu)(X_{t+\tau} - \mu)]}{\sigma^2}\, ,] If it does, then the autocorrelation of a sine function should give a cosine; however, the following code gives a

Dear R list As suggested by Prof Brian Ripley, I have tried to read acf literature. The main problem is I am not the statistician and hence have some problem in understanding the concepts immediately. I came across one literature (http://www.stat.nus.edu.sg/~staxyc/REG32.pdf) on auto-correlation giving the methodology. As per that literature, the auto-correlation is arrived at as per following.

Hi everyone, I'm trying to use the acf() function to calculate the autocorrelation of each column in a matrix. The trouble is that I can only seem to get the function to work if I extract the data in the column into a separate matrix and then apply the acf() function to this column. I have something like this: acf(mat,lag.max=10,na.action=na.pass) ...but I would really like to apply the

Hi List, I'm trying to calculate the autocorrelation coefficients for a time series using acf at various lags. This is working well, and I can get the coefficients without any trouble. However, I don't seem to be able to obtain the significance of these coefficients from the returned acf object, largely because I don't know where I might find them. It's clear that the acf

Hello all, I am trying to use lme to examine how a response variable (Chla) changes over time in different treatments (2 Temp & 2 Light levels). Within each treatment combination, there are two replicate tanks (each with unique TankID) with coral fragments in them. All tanks are subject to the same environment until Time=0, when treatments are imposed, and Chla is measured for each

Hi there, I am trying to compute the autocorrelation in a dataset using R's acf function. ACF automatically plots the results. This works well except in some cases xlim doesnt work data <- rnorm(2000,0,1) acf(data,xlim=c(1,10)) # works - the plot starts at 1 acf(data,lag=100,xlim=c(1,100)) # this does not work and the plot still starts at 0 Is there another way to specify the xlim or

Dear R list I am trying to understand the auto-correlation concept. Auto-correlation is the self-correlation of random variable X with a certain time lag of say t. The article "http://www.mit.tut.fi/MIT-3010/luentokalvot/lk10-11/MDA_lecture16_11.pdf" (Page no. 9 and 10) gives the methodology as under. Suppose you have a time series observations as say X =

When I run the "acf()" function using the "acf(ts.union(mdeaths, fdeaths))" example, the "acf()" function calls the "acf.plot()" function to generate this plot... http://members.cox.net/ddebarr/images/acf_example.png The plot in the lower right-hand corner is labeled "fdeaths & mdeaths", but the negative lags appear to belong to "mdeaths

Dear all, I have one Model (M3) fitted using the lme package, and I have checked the correlation structure of within-group errors using plot(ACF (M3,maxLag=10),alpha=0.05) But now I am not sure how to interpret this plot for the empirical autocorrelation function. The problem is that I am used to see/interpret diagrams in which all the autocorrelation Lags, except lag-1, are inside the

Hi there, I have R 0.64.2. I wonder if this R has acf function to calculate autocorrelation? since the help(acf) doesnt seem to be able to help me. thanks, Peppy -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the

On 11/28/2006 11:50 AM, A.I. McLeod wrote: > Hi Duncan, Hi Ian. > > ccf(x,y) does not explain whether c(k)=cov(x(t),x(t+k)) or d(k)=cov(x(t),x(t-k)) is calculated. The following example demonstrates > that the c(k) definition is used: > ccf(c(-1,1,rep(0,8)),c(1,rep(0,9))) > However S-Plus acf uses the d(k) definition in their acf function. I don't think our code looks

Dear All, I am very new to T. I need to fit a ARIMA model to my time series. So I found the auto correlation functions and partial auto correlation function in R. Now I want to save these valuse along with the significance levels to a file. How to do that?. I tried some function in R like write.table but returns an error "cannot coerce class "acf" into a

I've created a dataframe containing multiple ACF lists through the command rev.acf<-apply(rev.matrix, 2, acf, na.action=na.contiguous, lag.max=12, plot=FALSE) where rev.matrix is an n by t matrix containing n time series in columns. I'd now like to pull out only the ACF information and store it in a seperate n by 12 matrix. So far the only way I can work out to access this is

I need to modify the graph of the autocorrelation. I tried to do it through plot.acf but with no success. 1. I would like to get rid of the lag zero 2. I would like to have numbers on the x-axis only at lags 12, 24, 36, 48, 60, ... Could anybody help me in this? Any help will be appreciated Thank you for your attention Stefano [[alternative HTML version deleted]]

I am trying to understand the function acf stats:::acf shows me the function I am having trouble understanding the usage "$acf" in the following acf <- array(.C(R_acf, as.double(x), as.integer(sampleT), as.integer(nser), as.integer(lag.max), as.integer(type == "correlation"), acf = double((lag.max + 1L) * nser * nser), NAOK =

Hi all, I am trying to find the autocorrelation of some time series. I have say 100 files, some files have only missing values(-99.99, say). I dont want to exclude these files as they represent some points in a grid. But when the acf command is issued i get an error. Error in plot.window(...) : need finite 'ylim' values In addition: Warning messages: 1: In min(x) : no

Hello r-help, I have a couple of time-series of different length and I would like to produce a simple overview plot showing the autocorrelation functions of the series. The time-series are stored in a dataframe like this: > test.data item year value 1 xxx 1961 -1.09 2 xxx 1962 0.21 3 xxx 1963 -0.81 [trimmed] 8