similar to: R CMD build/check on Windows 7 -- Please ignore

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Hi R users all , I have a clean install of R-2.15.0 in a win32 machine and a problem loading Matrix 1.0-6 that looks like this: > library(Matrix) Loading required package: lattice Error : object ?kronecker? is not exported by 'namespace:methods' Error: package/namespace load failed for ?Matrix? > I understand that kronecker() now has an S4 generic in package methods. Is that a

An Sweave file, 'test.Rnw': \documentclass{article} \title{Sweave minimal} \author{MK} \begin{document} \maketitle We try Sweave: <<1>>= data(airquality) summary(airquality) x <- airquality[1, 1] @ I try Sexpr: \Sexpr{x} We plot: \begin{center} <<2, fig=TRUE, echo=FALSE >>= boxplot(Ozone ~ Month, data = airquality) @ \end{center} \end{document} I check the

Dear all, I wish to create a POSIXct variable from date and time variables using the ymd_hm function in package lubridate. In some cases data for time is missing, which causes a problem for ymd_hm. I wish to find a smooth way to handle this. # Some example data: x <- data.frame(date = c("2011-09-22", "2011-07-28"), time = c("15:00", NA)) x # paste date and

I would like to incorporate multiple summary plots from the rms package into a single device and to control the titles, and also to open a new device when I reach a specified number of plots. Currently I am only getting a single "plot(summary(" graph in the upper left- hand corner of each successive device. However, in the rms documention I see instances of a loop being used with

Hello, eveRybody, I've been trying to find the origin for the following formatting-"inconsistency": E. g., look at the number of digits in summary.defaults()'s output when NAs occur: in my example below the number of NA's is displayed as an integer, the rest as numeric (floating point numbers): > summary.default( c( 1:2, NA)) Min. 1st Qu. Median Mean 3rd Qu.

> sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] grid datasets splines utils stats [6] graphics grDevices methods base other attached packages: [1] effects_2.1-0 colorspace_1.1-1 [3] nnet_7.3-1

I haven't seen this cryptic warning before: > update.views('Robust') Warning message: In update.views("Robust") : The following packages are not available: covRobust, distr, FRB, MASS, mblm, multinomRob, mvoutlier, quantreg, RandVar, rgam, RobAStBase, robfilter, RobLox, RobRex, robust, RobustAFT, robustbase, ROptEst, ROptRegTS, rrcov, sandwich, wle >

Hello fellow R users, I am currently learning to use R, so please forgive me if there is an obvious explanation for the following problem. My goal is to perform WGCNA on a dataset of 19776 genes, so I opted to follow the block-wise network construction (Section 2c) in the WGCNA R Tutorial by Peter Langfelder and Steve Horvath. I ended up with 10 blocks and am able to plot the dendrograms and

Dear People I can't figure out how to fix this problem: rgl won't run under R 2.14.2 (it was working for me before under 2.14.0). The error message is: > library(rgl) Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/

Dear list, I'm running an R script which first line is: #!/usr/bin/Rscript While running that script from the system console (in Red Hat Enterprise Linux 6) I got the following error: Error in plot2(x = sim, y = obs, plot.type = "single", main = paste("Daily", : could not find function "hasArg" Calls: plot_results -> plot_out -> ggof -> plot2

Dear all, summary: My LC_NUMERIC is changed from C to de_DE by library (qtbase). [which shouldn't happen according to the warning when setting it back manually]. I posted an issue at their github repository, but maybe the behaviour is a bit more of general interest. However, if LC_NUMERIC is changed, as.character () uses the decimal separator that belongs to LC_NUMERIC (and not options

Hi, I've noticed an issue with S4 methods and namespaces which only arises in particular, difficult to reproduce configurations. One example is the ggbio package in Bioconductor, which currently emits these warnings when its namespace is loaded: ---------------------- library(ggbio) Loading required package: ggplot2 Attaching package: ‘ggbio’ The following object(s) are masked from

Please, I am receiving lot of e-mails that I do not want. Please could you delete my e-mail. Thank, Judit -----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] On Behalf Of Thomas Adams Sent: Monday, December 12, 2011 3:22 PM To: Bert Gunter Cc: r-help at r-project.org Subject: Re: [R] Boxplot of multiple vectors with different lengths Bert,

Folks: I thought John Nash's comment below was profound and a possible Fortunes candidate: (Aside: I believe it applies to a great deal of what is discussed on this list, not just stochastic optimization.) Cheers, Bert ... (in the context of stochastic optimization) >... As with many tools in this domain, for effective use they > require more knowledge than many of their users

Folks: Suppose I wish to input a text file with variable length lines and possible whitespace as is and then parse the resulting character vector in R. Each line of text is terminated with "\n" (newline character). Is there any reason to prefer one or the other of: scan (filename, what ="a",sep ="\n") ##or readLines(filename) If it makes a difference, I'm on

On Thu, Sep 20, 2012 at 9:01 AM, David Winsemius <dwinsemius at comcast.net> wrote: (In response to an OP's aplogy for an "awkwardly worded question"): > Awkwardly worded questions will get much better answers if they are accompanied by some test data. Fortune nomination! Cheers, Bert > -- > David Winsemius, MD > Alameda, CA, USA > >

Dear R-users, I am having some issues with a package I am working on (using R 2.12.1 in a Linux environment) and would like to have your opinions/advises. My package - let's call it mypackage for the purpose of this email - passes all checks of R CMD check, except for the following failure message: Error : .onLoad failed in loadNamespace() for 'mypackage', details: call:

Hi Folks: I'm writing a little package that may not ever hit CRAN or even be distributed beyond a relatively narrow audience at my company. Nevertheless, I have tried to adhere to practices that would work if it were. With that in mind, I have read the Writing R Extensions Manual (and my humble kudos to its writers, as it has successfully guided even an ignoramus like myself ) and Luke