similar to: info about R arulesSequences

Hi, I'm using the cspade function from the arulesSequences package on linux and keep getting the error: "Error in makebin(data, file) : 'sid' invalid" any information on how to solve this would be much appreciated. Thanks. -- View this message in context: http://r.789695.n4.nabble.com/cspade-error-tp3774834p3774834.html Sent from the R help mailing list archive at

Hi, I am trying to use the CSPADE function as part of the ArulesSequences package. When running with my own data I get a system invocation error, and also get the same when running the built in example with the zaki data: > example(cspade) And get the following error: preprocessing ...Error in cspade(zaki, parameter = list(support = 0.4), control = list(verbose = TRUE)) : system

hi I have any problems with cspade; I convert my columns in factor, and then I coerce my data frame in transaction; but when I want do the cspade exit this message: slot transactionInfo: missing 'sequenceID' or 'eventID So I ask to everybody: "somebody help me?" because i tried everything without results. Thank to everybody -- View this message in context:

Package arulesSequences isn't on CRAN for automatic package install. I downloaded a *.tar.qz version because no *.zip for Windows offered. Why is this? I expanded *.tar.qz in ~R/R-2.11.0/library/arulesSequences I then assumed that R would list it in the packages list but it doesn't. What am I doing wrong ? Regards

I am in the process of creating a package in R which calls pre-compiled C code i.e. '.exe' files in Windows. Since CRAN will not accept packages with binary code files, what are my options to meet the requirements while still including the executable file? I read section 1.5.2 of the manual which mentions three options two of which involve negotiating with CRAN administrators. The third

I am in the process of creating a package in R which calls pre-compiled C code i.e. '.exe' files In reading the manual, I came across this: "A source package if possible should not contain binary executable files: they are not portable, and a security risk if they are of the appropriate architecture. R CMD check will warn about them2 unless they are listed (one filepath per line) in

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

Hi, Current implementation: setequal <- function (x, y) { x <- as.vector(x) y <- as.vector(y) all(c(match(x, y, 0L) > 0L, match(y, x, 0L) > 0L)) } First what about replacing 'match(x, y, 0L) > 0L' and 'match(y, x, 0L) > 0L' with 'x %in% y' and 'y %in% x', respectively. They're strictly equivalent but the latter

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

Hello Sean and Tobias, Sean, Thank you. Could you describe Nick's ideas in few words or give me links to your discussion, so I could adapt my ideas to it. Tobias, Your patch fails on several modules in my benchmark (73 of ~1800 tests). I have sent one as attachment. See statistics files for more details, all the .ll files you could simply find in test-suite object directory (after

Hi All, I've been having a little trouble with creating a loop that will run a a series of t.tests for inspection, Below is the code i've tried, and some checks i've looked at. I've used the get(paste()) idea as i was told previously that the use of the eval should try and be avoided. I've run a single syntax to check that my systax is correct and works without any problems

Hi Stepan, Sorry for the delay. It's great that you are working on MergeFunctions as well and I agree, we should definitely try to combine our efforts to improve MergeFunctions. Just to give you some context, the pass (with the similar function merging patch) is already being used in a production setting. From my point of view, it would be better if we focus on improving its capability

Hello, Anyone know if R can read others format like the format.freeling here the software: http://gramatica.usc.es/pln/tools/freeling.html I want create a corpus with this format, or ¿ the best way is read from a plain text? thanks in advanced. Greetings Jenn. [[alternative HTML version deleted]]