similar to: trouble installing Rmpi on a debian machine

Hello, I'd like to take a look at how the taskPR package performs on our computational cluster, and this morning I've spend some time trying to do a test install of this package on one of our linux machines. Unfortunately I've been unsuccessful in completing the install, and I wondered if someone could please advise me. As I've noted I working on a linux machine, and it's

An hour of my life disapeared and my beautiful uptime was rebooted and it was fixed by reading http://serverfault.com/questions/98900/is-a-reboot-required-to-refresh-permissio ns-after-adding-a-user-to-a-new-group #/home is mounted from a NFS export [jpyeron at node000 ~]$ cat /tmp/jobs/foo.txt ~jobs/test.txt ~jobs/userstest.txt afasdasd cat: /home/jobs/test.txt: Permission denied Sun May 5

Dear People, This may not be the right place to ask a question about Rmpi, but I don't know of a better one. I am trying to get a simple program working using Rmpi with the model of 1 R master and n C slaves. What I am trying to do is have each of the C slaves generate a random number from U[0,1], and then have the master collect all n numbers as a vector and output it. However even doing

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

After several trial and error attempts, I managed to install the Rmpi package without error on my Linux machine, running Fedora 5. I installed lam-7.1.2, lam-devel-7.1.2 and R-2.4.1, R-devel-2.4.1 The Package Rmpi_5.0-3.tar.gz, I installed once from within R and once from the command line to make sure, I link the right libraries: R CMD INSTALL Rmpi_5.0-3.tar.gz

Hi all, anyone has an idea how I could fix this? \donttest{ ## Set colors from colorspace package with a fallback col <- try(colorspace::rainbow_hcl(5), silent = TRUE) %||% rainbow(5) } The problem is that this makes R CMD check freak out (http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/falsy-00check.html) if the colorspace package is not declared as a dependency.

On 08/12/2014 9:40 AM, G?bor Cs?rdi wrote: > Hi all, > > anyone has an idea how I could fix this? > > \donttest{ > ## Set colors from colorspace package with a fallback > col <- try(colorspace::rainbow_hcl(5), silent = TRUE) %||% rainbow(5) > } > > The problem is that this makes R CMD check freak out >

In the documentation for my package I would like to reference the Rmpi documentation. I started with \link{Rmpi}, which caused R CMD check to complain that it could not resolve the link. Since Rmpi wasn't loaded, this isn't surprising. Ideally the user would see Rmpi, but the link would go to Rmpi's Rmpi-pkg. It's not clear to me if this is possible. I've combined two

This is a rather obscure question, I realize. I have written to the package author but have not heard back as of yet. I have read the README in the package, as well, but it didn't give me enough detail to diagnose the problems that I am having. (I did edit out the LAM-MPI check in zzz.R.in.) I am working to install Rmpi on top of MPICH on a beowulf cluster. Below is the output of the

Dear all, I installed Rmpi (without error messages), but when I try to load the library in R I get the following error message: > library(Rmpi) Error in dyn.load(file, ...) : unable to load shared library '/Users/ebruch/Library/R/2.6/library/ Rmpi/libs/i386/Rmpi.so': dlopen(/Users/ebruch/Library/R/2.6/library/Rmpi/libs/i386/Rmpi.so, 6): Library not loaded:

Hello, I've installed R on my RHEL3 cluster and I am trying to get Rmpi to work properly. R is installed using the following ./configure --prefix=/home/apps/R-2.2.0 I installed snow using R CMD INSTALL /home/apps/snow And finaly Rmpi R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam There were no errors or warnings upon installation. However when i perform the test

If you're on the new Makefile system, you will want to update your Makefile.rules. The patch below provides some important fixes for parallel builds and dependencies. It also adds some new features like the -local targets. For example, you can now build "all-local" to build the local directory without recursing into subdirectories. See the comments below for details of the change.

I am running R 2.14.1 on a Windows XP (32 bit) system, and am trying to install the package 'Rmpi' to allow me to parallel process on all cores of a quad-core PC (and if that works well, I want to add extra slaves from a dual-core laptop). Rmpi appears to install OK (see below), but I am encountering the following error when I try and load the package: > utils:::menuInstallLocal()

I am working on a SLES 10 cluster with R available on it. To better use my resources, I want to use Rmpi, but I am having a difficult time installing it. I have set the $R_LIBS variable correctly. The MPI libraries are available through the PGI compiler, but this R instance was compiled with GCC. The Rmpi package can be compiled and installed with %R CMD INSTALL Rmpi_0.5-5.tar.gz

Hi guys, I'm trying to install Rmpi on the slave nodes of my cluster. The installation seems to work with no errors or warnings using this command: R CMD INSTALL --configure-args="--with-Rmpi-include=/usr/lib64/openmpi/1.3.2-gcc/include --with-Rmpi-libpath=/usr/lib64/openmpi/1.3.2-gcc/lib --with-Rmpi-type=OPENMPI" Rmpi_0.5-8.tar.gz But when I attempt to load Rmpi I get the

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

Dear R yet again! I finally got the Rmpi package to install! Yay!. However, when I go into R to use it, there is an error with the dyn.load file. This should be simple (allegedly). Please help. Thanks, Sincerely, Erin mailto: hodgess at gator.uhd.edu /home/faculty/hodgess/R-2.6.0/bin [hodgess at gator bin]$ ./R CMD INSTALL Rmpi_0.5-4.tar.gz

Dear R People: I am trying to put Rmpi with R-2.6.0 on an Ubuntu operating system. When I do the installation, all is well. But when I go into R and fire up the library, this is what I get: > library(Rmpi) Error in dyn.load(file, ...) : unable to load shared library '/home/cms/Desktop/R-2.6.0/library/Rmpi/libs/Rmpi.so': /home/cms/Desktop/R-2.6.0/library/Rmpi/libs/Rmpi.so:

Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make the changes to support Open MPI. I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under R 2.6.0 but I cannot convince myself yet whether it works or not. Simple tests work. E.g. on my Debian testing box, with Rmpi installed directly using Open Mpi 1.2.3-2 (from Debian) and using 'r' from

Hi team, I am beginning on R and I try to install Rmpi library and I have problems, I have installed LAM-MPI on Rocks; [rcnavarro at hpc-cip ~]$ laminfo LAM/MPI: 7.1.1 Prefix: /opt/lam/gnu Architecture: x86_64-unknown-linux-gnu Configured by: root Configured on: Wed Oct 19 18:12:25 EDT 2005 Configure host: rocks-156.sdsc.edu Memory