similar to: Including multiple third party libraries in an extension

Hi there, I'm writing an R extension that has a C component that relies on two third party libraries that I'm bundling with the extension. I'd like to statically link my resulting extension so that I can rely on the bundled versions of the libraries I'm distributing, so there's two questions - 1, does R allow statically linked C extensions to be used at runtime? 2, are there

Dear R-developers, I am trying to reproduce the autoconf.ac example from R-ext and fail. My autoconf file looks like this [autoconf.ac] # original by Friedrich Leisch, much changed by BDR AC_INIT([SBMLodeSolveR]) dnl Select an optional include path, from a configure option dnl or from an environment variable. AC_ARG_WITH([sbmlode-include],

Hi there, I'm trying to do something like a migration of an R program. I've got a function and some variables in an interactive-session: r <- .5 ## estimatePi references r estimatePi <- function(seed) { set.seed(seed) numDraws <- 1e+05 x <- runif(numDraws, min = -r, max = r) y <- runif(numDraws, min = -r, max = r) inCircle <- ifelse((x^2 + y^2)^0.5

Dear R experts, recently I started developing a Rcpp package "OpenMPTest". Within that package I want to use OpenMP, as in the following code example: // header file #include <omp.h> using namespace Rcpp ; RcppExport SEXP testOpenMP( SEXP nThreads ) ; // cpp file SEXP testOpenMP( SEXP nThreads ) { BEGIN_RCPP NumericVector numberThreads = NumericVector( nThreads );

HI! Have somebody an expample how the syntax is for passing the path of include files to: "If a package needs to specify additional directories for search- ing header les (`-I' options) or additional libraries for linking (`-l' and `-L' options), it should do this by setting the variables PKG_CPPFLAGS and PKG_LIBS in `src/Makevars'." But no examples. :-( src/Makevars.

Hallo! Thanks for the answers that I received. I had downloaded the last distribution of RMySQL from /R/CRAN/src/contrib/Devel.. Its the first package that I am trying to compile under Windows. >From the Compiler I am getting the following error message. In file included from RMySQL.c:1: RMySQL.h:24: mysql.h: No such file or directory RMySQL.h:25: mysql_com.h: No such file or directory

Apologies in advance for the long post. I'm currently using a Makefile to build my shared library. Pursuant to the R-exts manual, I'd like to switch to a Makevars file or a configure file if necessary. Having never used these types of make utilities before, I'm a bit lost. My package is quite simple. It only has one source file and one header: excelpoi.cpp excelpoi.h The reason I

Dirk, thank you a thousand times. Indeed, src/Makevars was wrong. I modified Makevars so that now looks like the below and the package now compiled and linked properly. CXX_STD = CXX11 PKG_LIBS += $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(shell ${R_HOME}/bin/Rscript -e "RcppParallel::RcppParallelLibs()") PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -I../inst/include

One other solution that's only a little crazy: you could have a R function within your package that generates the appropriate (portable) Makevars, and within the package `configure` script call that function. For example" R --vanilla --slave -e "source('R/makevars.R'); makevars()" And that 'makevars()' function could generate portable

On May 13, 2015, at 2:28 PM, Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: > While at it: 'Makevars' is an R invention (i.e. documentation of it > is only available through the R docs), correct? /Henrik > Well, it's just a Makefile fragment that gets included along with the rest of the Makefiles, so for all practical purposes it's just a Makefile which

Hi I have sent a previous email "Error in dyn.load()" for which, shame on me, I later found a partial answer. I have been trying to look into what I exactly need to include into Makevars and where it needs to be located and have not found a satisfying answer yet. Maybe the following questions are helpful for other people as well. Again, I am trying to include a C function tools.c into

Hi, While debugging a network server I'm developing I noticed something unusual - call to unserialize() resulted in an error about loading a namespace. I was a bit taken back by this - why should unserializing an object cause a namespace lookup? Are there any other side-effects of unserialize() that I should be cautious about? I've been digging through the R_Unserialize() call, I

Hi, Recently, I made an R package that used the C++ library Boost.Thread (http://www.boost.org/doc/libs/1_54_0/doc/html/thread.html) for multithreading. Previously, I have posted a question at stackoverflow (http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-http), and I also asked at rcpp-devel

Hi, I am trying to package some code to use with R and wanted to call Rscript from within the Makevars file (I am trying to automate the setting of the location of a third party library depending on what is available / the system the package is being installed on). If I just have a simple Makevars containing PKG_LIBS= -lnag_nag -L/fserver/nagprod/FL22/fll6a22df/lib the package is built

hi all - i have a source package i'm writing that i'd like to be able to install with a special library that my R src files rely on. to be more precise, i have a normal R package directory structure (i.e. src/ R/ man/ DESCRIPTION NAMESPACE etc.). i also have another directory here called depPkg, and it has it's own configure file for the canonical './configure && make

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c

I have been RTFM/doc/www, but I'm still lost. How does one tell R CMD INSTALL and R CMD check (both) that libraries are installed in non-usual places and so -I/APPS/include (or whatever) is necessary in CPPFLAGS and -L/APPS/lib (similarly) is necessary in LDFLAGS? I know I can hardwire them in pkg/src/Makevars, but this requires hand editing of that file by each installer (yuck!) rgentlem

I have been RTFM/doc/www, but I'm still lost. How does one tell R CMD INSTALL and R CMD check (both) that libraries are installed in non-usual places and so -I/APPS/include (or whatever) is necessary in CPPFLAGS and -L/APPS/lib (similarly) is necessary in LDFLAGS? I know I can hardwire them in pkg/src/Makevars, but this requires hand editing of that file by each installer (yuck!) rgentlem

Hi. I am writing some code in C that I would like to link into R. My Makevars file is: PKG_CPPFLAGS=-I/usr/local/include PKG_LIBS=-L/usr/local/lib -lgsl PKG_CFLAGS = -Wall -O0 -g -p -pg The source file is core.c,. and I am compiling using R CMD SHLIB core.c The output is gcc -arch x86_64 -O3 -g -p -std=gnu99 -I/Library/Frameworks/ R.framework/Resources/include

Hello, In the src folder of my R package I have a.cc b.cc f/g/x.cc my Makevars.in has all: $(SHLIB) upon installing only, a.o and b.o is build and the final dll is comprised of a.o and b.o How can I instruct $(SHLIB) to pick up its source files from all subdirectories (or maybe a subset, though here it will be all) in src ? Much thanks Saptarshi