similar to: Typo in tools:::format.check_Rd_metadata()

Dear R-devs, Scenario: When checking a package via `R CMD check package_tar.ball`, required / suggested packages may be missing. R subsequently returns a list of packages that are missing (delimited by spaces). Example: ``` R CMD check glmSparseNet_0.99.13.tar.gz * using log directory '/home/ubuntu/Bioconductor/glmSparseNet.Rcheck' * using R Under development (unstable) (2018-06-06

On 18/09/2018 2:16 PM, Marcel Ramos wrote: > Dear R-devs, > > > Scenario: > > When checking a package via `R CMD check package_tar.ball`, required / suggested packages may be missing. R subsequently returns a list of packages that are missing (delimited by spaces). > > Example: > > ``` > R CMD check glmSparseNet_0.99.13.tar.gz > * using log directory

"hiding" unconditional assignments in the if() parentesis makes for hard to read code and has no advantage over placing these assignments in proper formated lines before the if() statement. Simply move those lines out. Before sending out roughly 20 patches to fix the roughly 50 cases - all in the nouveau driver. I would like to know if this will be accepted at all. Signed-off-by:

Hola, tengo una matriz de especies donde cada celda tiene datos con caracteres (son parentesis). Cómo la puedo reordenar considerando tanto filas como columnas? Ejemplo: ,Specie 1, Specie2, Specie3 Specie1, NA, 3(1-4), 8(6-9) Specie2, 5(2-6),NA, 5(4-6) Specie3, 2(1-3), 10(5-15), NA Quiero: ,Specie 2, Specie3, Specie1 Specie2, NA, 5(4-6) , 5(2-6) Specie3, 10(5-15) ,NA,

Queridos amigos tengo el siguiente problema: Tengo alrededor de 100 archivos del tipo flowFrame (datos de citometria) que he importado a R. Estos archivos tienen 6 columnas y 10.000 (diez mil) filas. Tengo que calcular el promedio de la quinta columna y graficarlo contra el promedio de la segunda columna. La segunda columna tiene el mismo valor para las 10.000 filas en cada archivo asi es que

Full_Name: Henrik Bengtsson Version: 1.3.1 OS: Sun Solaris 8 Submission from: (NULL) (130.235.3.49) I have been trying to install [R] v1.3.1 locally on a Sun Solaris 8 machine and I ran into the (already known) perl problems that express theselves as: Bare word found where operator expected at /usr/matcent/hb/R/R-1.3.1/share/perl/R/Rdconv.pm line 1390, near "$txtout mywrap"

Calling library(..., quietly=TRUE) may still output: Loading required package: <other pkg> in some cases, e.g. > library("R.utils", quietly=TRUE) Loading required package: R.methodsS3 [...] I traced this to base:::.getRequiredPackages2(), which forgets to pass 'quietly' to an internal library() call: if (!attached) { if (!quietly)

Dear R-users, i'm a very newbie in linux, but decided to build R from source. Following the "R Installation and Administration" manual, i did this: ./configure --enable-R-shlib # this option is here because i intend to build the GNOME console after... make make check no problems in make check, but: make check-devel #and also make check-all indicated some WARNINGs in the log

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Hi guRus, i'm running R-2.15.1 and the R CMD CHECK output appears to have changed substantially, in that instead of pointing me to the offending functions or files, I get lots of 'call sequence' traces as below. I've been using R CMD CHECK for years & never seen anything like this before. This is on a pretty fresh OSX 10.8 Mountain Lion installation, where I installed R from

Dear R-developers, I am getting the following error message (see bottom of e-mail) and can't make a clue out of it. The zzz.R file contains .First.lib <- function(lib, pkg) library.dynam("SBMLodeSolveR",pkg,lib) .Last.lib <- function(libpath) library.dynam.unload("SBMLodeSolveR", libpath) There is a SBMLodeSolveR.so file in the src directory which works if loaded

Dear R developers, It would be great if you could implement the two minor code changes suggested below, which would help processing large objects in R. Jens Oehlschl?gel # Wish no. 1: let [.AsIs return the class AFTER subsetting, not the class of the original object # Wish no. 2: adjust write.csv and write.csv2 for multiple calls in chunked writing # Rationale no. 1: a couple of packages

Hi, I am new in writing R extension. I read the "Writing R Extensions", and search online but just cannot find the answer. I am trying to add c-code, which depend on GSL C library, into my R package. I am using Max OS-X 10.4.3, powerpc-apple-darwin8-gcc-4.0.1 I begin wtih package.skeleton, and then add my c file into folder src and then add file Makevars: PKG_LIBS=-lgsl

I am writing my first R package, and I have been getting the following series of errors when I run R CMD check: * checking S3 generic/method consistency ... WARNING Error: package/namespace load failed for 'REEMtree' Call sequence: 2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), call. = FALSE, domain = NA) 1: library(package,

Hi Kurt, Is it intended that numeric_version() returns an error by default on non-character input in R 4.4.0? It seems that I can turn this into a warning by setting _R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_=false but I don't seem to be able to find any of this mentioned in the NEWS file. Thanks, H. On 4/1/24 05:28, Kurt Hornik wrote: >>>>>> Andrea Gilardi via

Full_Name: Steven McKinney Version: 2.9.0 OS: Mac OS X 10.5.6 Submission from: (NULL) (142.103.207.10) A corrupt data frame can be constructed as follows: foo <- matrix(1:12, nrow = 3) bar <- data.frame(foo) bar$NewCol <- foo[foo[, 1] == 4, 4] bar lapply(bar, length) > foo <- matrix(1:12, nrow = 3) > bar <- data.frame(foo) > bar$NewCol <- foo[foo[, 1] == 4, 4]

On 4/24/24 23:07, Kurt Hornik wrote: >>>>>> Herv? Pag?s writes: >> Hi Kurt, >> Is it intended that numeric_version() returns an error by default on >> non-character input in R 4.4.0? > Dear Herve, yes, that's the intention. > >> It seems that I can turn this into a warning by setting >>

I have a peculiar problem that I'm sure is a simple one, but I can't figure out what my mistake is. Can someone enlighten me? I have a simple file, class.R: ## setClass("abc",representation(a = "character", b = "ANY")) I have a package directory ExpressCGH1 made with package.skeleton. The package happily builds and installs, but R CMD check fails with

Dear all, I have a question regarding the R-devel version of .make_numeric_version() function. As far as I can understand, the current code (https://github.com/wch/r-source/blob/66b91578dfc85140968f07dd4e72d8cb8a54f4c6/src/library/base/R/version.R#L50-L56) runs the following steps in case of non-character input: 1. It creates a message named msg using gettextf. 2. Such object is then passed to

>>>>> Herv? Pag?s writes: > Hi Kurt, > Is it intended that numeric_version() returns an error by default on > non-character input in R 4.4.0? Dear Herve, yes, that's the intention. > It seems that I can turn this into a warning by setting > _R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_=false but I don't > seem to be able to find any of this mentioned