similar to: Problem building R-2.13 r54683 on Windows

I am building R-2.13 r54645 from source as described here: http://cran.r-project.org/doc/manuals/R-admin.html#Building-from-source The "make all recommended" command ends as follows on both 32 and 64-bit Windows (Windows Server 2003 R2 Enterprise Edition Service Pack 2 and Windows Server 2008 R2 Enterprise): gcc -std=gnu99 -I../../include -DHAVE_CONFIG_H -O3 -Wall -pedantic -c

Hello, I am stuck trying to build 64-bit R 2.12.1 on Windows 7, hopefully the problem is obvious and someone can point out what I'm missing. Well into the "make all recommended" process, I get an error: make[4]: *** [Rzlib.dll] Error 4 (A longer report on the error in the build print is below - there is also help output from sed that I have included but don't know if it is

On Thu Jan 9 2014 03:47 Henrik Bengtsson wrote: > This is is an issue that bugged me for a while. I encountered a year > ago (April 2012) when I first tried to build R from source on Windows. > I never figured out what the solution is or if I'm doing something > wrong myself (but I have found a tedious workaround). I'm still on > the same Windows 7 Ultimate machine with

This is is an issue that bugged me for a while. I encountered a year ago (April 2012) when I first tried to build R from source on Windows. I never figured out what the solution is or if I'm doing something wrong myself (but I have found a tedious workaround). I'm still on the same Windows 7 Ultimate machine with NTFS, but I now made sure I started from scratch so I have a completely

----- Original Message ----- > From: "Simon Urbanek" <simon.urbanek at r-project.org> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > Cc: "R-devel" <r-devel at r-project.org> > Sent: Monday, January 12, 2015 5:50:35 PM > Subject: Re: [Rd] R CMD build looking for texi2dvi in the wrong place (R-devel) > > Dan, > > On

Hello, I've just downloaded the R-2.2.1 source and I'm trying to compile it under cygwin (1.5.19-4). The configure script runs ok, but make generates the following error after a while: ---------------------------------------------------------------------------- ----- al/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c zutil.c -o zutil.o rm -f libz.a ar cr libz.a adler32.o

----- Original Message ----- > From: "G?bor Cs?rdi" <csardi.gabor at gmail.com> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > Cc: r-devel at r-project.org, "John McKown" <john.archie.mckown at gmail.com> > Sent: Thursday, March 19, 2015 11:15:47 AM > Subject: Re: [Rd] CRAN binary, but no source > > > > > On

----- Original Message ----- > From: "G?bor Cs?rdi" <csardi.gabor at gmail.com> > To: "John McKown" <john.archie.mckown at gmail.com> > Cc: r-devel at r-project.org > Sent: Thursday, March 19, 2015 9:03:37 AM > Subject: Re: [Rd] CRAN binary, but no source > > On Thu, Mar 19, 2015 at 11:59 AM, John McKown > <john.archie.mckown at

We were also able to reproduce the issue on Windows Server 2012. If there's anything we can do to help please let me know; Elliot Waingold (CC'd here) can provide access to the VM we used for testing if that's of any help. # David Smith -- David M Smith <davidsmi at microsoft.com> R Community Lead, Revolution Analytics (a Microsoft company)? Tel: +1 (312) 9205766 (Chicago IL,

----- Original Message ----- > From: "Uwe Ligges" <ligges at statistik.tu-dortmund.de> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "R-devel at r-project.org" <r-devel at r-project.org> > Sent: Saturday, August 8, 2015 3:57:34 PM > Subject: Re: [Rd] download.file() on ftp URL fails in windows with default download method > >

On 10/03/2015 3:17 PM, Duncan Murdoch wrote: > On 10/03/2015 2:56 PM, Dan Tenenbaum wrote: > > > > > > ----- Original Message ----- > >> From: "Duncan Murdoch" <murdoch.duncan at gmail.com> > >> To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > >> Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at

> On 19 Mar 2015, at 19:45 , G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: > > On Thu, Mar 19, 2015 at 2:19 PM, Dan Tenenbaum <dtenenba at fredhutch.org> > wrote: > [...] > >> >> In github? ;-) >> > > Well, that's the thing. If github/cran is a read-only mirror, then should I > delete these versions from there, too? :) On CRAN not

Well, I'm getting a warning (not an error) when the package doesn't exist. I interpreted "most often" to mean that suppressing warnings/errors is why you'd most often use this argument, as most packages don't emit startup messages. And technically there isn't a problem with attaching the package, since we don't even try to attach packages that don't exist.

R CMD build fails with recent R-devel because it is looking for texi2dvi in /usr/local/bin, but on this system, MacTex has installed it in /usr/bin. $ R CMD build IRanges * checking for file 'IRanges/DESCRIPTION' ... OK * preparing 'IRanges': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR

Thank you Dan but it isn't my tests that are failing (all of them pass without problem) but one of the examples from the inst/examples directory. I did try, however, to start R with the environmental variables as you suggest but it had no effect on my tests. Charles On Wed, May 13, 2015 at 1:51 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message

Hi, > url <- "ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt" > download.file(url, tempfile()) trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt' Error in download.file(url, tempfile()) : cannot open URL

----- Original Message ----- > From: "Duncan Murdoch" <murdoch.duncan at gmail.com> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at r-project.org > Sent: Tuesday, March 10, 2015 11:37:12 AM > Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)

Hello. I am trying to build R on Windows. It appears that my build passes the various "make checks" (unless I missed some error) and running Rterm seems to work fine whereas Rgui has an immediate error stating " AppName: rgui.exe AppVer: 2.150.58871.0 ModName: rzlib.dll ModVer: 0.0.0.0 Offset: 0000a9e5 The taskbar still works, but the console window has nothing in it, and

Hello, I am trying to compile R-2.2.0 on Slackware 10.2. I did ./configure --prefix=/usr --build=i486-slackware-linux. It went off without any problem and gave this configure status: R is now configured for i486-slackware-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -g -O2 C++ compiler: g++ -g -O2 Fortran

Hi, The page http://cran.r-project.org/bin/windows/base/rtest.html has a link to: http://cran.r-project.org/bin/windows/base/R-2.15.0rc-win.exe However, clicking on that link gives a 404 "Object not found' error. FYI. Dan