similar to: Strange behaviour of read and writeBin

Hello, I am running large simulations, which unfortunately I can't really replicate here because the code is so extensive. I rely heavily on mclapply, but I realize that I'm losing data somewhere. There are two worrisome symptoms: 1) I am getting 'NULL' as a return value for some (but not all) elements of the output when I use mclapply, but not if I use lapply > tmp2[1:3]

Hi, I have a problem on my mac when trying in R to produce png images. I am getting this warnings with the ArrayQualityMetrics package: > arrayQualityMetrics(rma_fatBody, outdir="normData", force =T) The report will be written into directory 'normData'. KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 (loaded the KernSmooth namespace) libpng warning: Application built

Dear all, I have a few files with binary data written by a C program a friend wrote. I allready have program to read these files, Thomas Lumley and Prof Brian D Ripley was kind enough to respond to a question to this list earlier with some code that works perfectly, so this is really no problem, it is more out curiousity. Most of my files consists of 40000 single precision floats, and I figured

Thanks very much, Professor Ripley. Reid Huntsinger -----Original Message----- From: ripley at stats.ox.ac.uk [mailto:ripley at stats.ox.ac.uk] Sent: Tuesday, August 06, 2002 3:00 AM To: Huntsinger, Reid Cc: r-help at stat.math.ethz.ch Subject: Re: [R] pipe and binary i/o (on Linux) On Mon, 5 Aug 2002 ripley at stats.ox.ac.uk wrote: > pipe predates readBin, and no one has seen a

how to use the readBin ? i want to write the extended ascii character `Œ` into a file named c:/testbin, and read it in the R console ,display it as `Œ` in R console. now i can write it . zz <- file("c:/testbin", "wb") writeBin(charToRaw("\u0152"), zz) close(zz) when i open the file with office(encoding=utf-8),i can see `Œ`,whay i can not read it with readBin?

Hi all - I'm playing around with an attempt to do some serial communication from within R to a microcontroller board. I open a connection: zz = file("/dev/ttyUSB0",open="a+") ## text mode ... when I execute writeLines("0",con=zz) I know the board receives the "0" because the board's serial comm LEDs light up when submit the command at the R

Full_Name: Ken Yap Version: 1.6.1 OS: Linux (SuSE 8.0) Submission from: (NULL) (129.78.64.5) I'm trying to copy a file using readBin and writeBin. (The reason is to be able to pipe PostScript or PDF output to a socket later, this is just an experiment.) I do: zz <- file("foo.ps", "rb") r <- readBin(zz, character(), 1000000) yy <- file("bar.ps",

Hi all, I'm having problems trying to export binary arrays from R and importing them into fortran (linux openSUSE 10.3 (x86_64), gfortran compiler, fortran 90/95 program). Let's say the problem can be expressed as: R part ------------ >whini <- runif(1000) >writeBin(whini,"fwhini.dat") f90 part ------------ PROGRAM foo INTEGER, PARAMETER :: DP = KIND(1.0D0) INTEGER ::

Hi all, I wrote a function (in R batch mode) which reads binary data, interpolates sometimes and wrote a new binary file of the same size as the input file. Her is a bit of code: while (length( head <- readBin(si, integer(), 64, size=2))) { data <- readBin(si, integer(), head[5], size=2) ## now write head to new file writeBin(head, so, size=2) ## if head[4] is 9 or

R-helpers: What would be the absolute fastest way to make a large "empty" file (e.g. filled with all zeroes) on disk, given a byte size and a given number number of empty values. I know I can use writeBin, but the "object" in this case may be far too large to store in main memory. I'm asking because I'm going to use this file in conjunction with mmap to do parallel

Hi, I'm using R-2.12 on a linux 64bit machine. When I run a chunk of code inside a foreach() %do% { ...} or %dopar% {...} (with doMC backend) I keep getting a segfault. Running the *same* code within lapply(something, function(x) ... ) doesn't result in any segfaults. I'll paste the output below, but I'm not sure it would be helpful. I'm more curious how to go about smoking

Hi Assorgia, Thanks for the flash animation. I think Icecast1 might be the solution. I am just a little bit scared by the message "Note that icecast 1 is deprecated and unsupported, and may possibly induce nausea in small children, hair loss in men, and estrogen fluctuations in women" that appears on the download page. I have a nice blond hair of "Principe Azzuro" that I

Hi all, I am trying to download, decompress and read a csv file. My code: myurl <- "ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE24729/GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # myfile <- "GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # download.file(myurl, destfile=myfile, mode="w") # mycon <- gzcon(gzfile(myfile,

Someone solved the problem of saving R-objects to a database? These are the two varaints I've tried so far without success: 1) ser = rawToChar(serialize(obj, NULL, ascii=TRUE)) dbSendQuery(link, paste("insert into table values(1, '",ser,"')",sep='')) The field to save the object in the MySQL Database is of type text. unser = dbGetQuery(link,"select

Dear R-help Hi, I'm Won. I try to do microarray normalization by R. I use justRMA function within affy package, got error about segment fault. I don't know why it happen. I attached error below. Please help me. Thank you. Cheers, Won ======================= OS : Redhat linux Cpu : intel xeon X5570 Memory : 26Gb & OS : Ubuntu Cpu : intel q6600 Memory : 8Gb

On Tue, Sep 1, 2020 at 3:57 PM David Blaikie <dblaikie at gmail.com> wrote: > > > On Tue, Sep 1, 2020 at 12:42 PM Nico Weber <thakis at chromium.org> wrote: > >> On Tue, Sep 1, 2020 at 3:32 PM David Blaikie <dblaikie at gmail.com> wrote: >> >>> On Tue, Sep 1, 2020 at 12:07 PM Nico Weber via cfe-dev < >>> cfe-dev at lists.llvm.org>

All, At first glance, a recent commit to R-devel ( https://github.com/wch/r-source/commit/2c182014ecc8c2407a89092c9162d86046bd18da) appears to be related to long vector support. But as Henrik Bengtsson points out at https://github.com/HenrikBengtsson/Wishlist-for-R/issues/97#issuecomment-562659134, writeBin() still prohibits long vectors. Are there any plans to add long vector support to R

I am trying to open an existing binary file, seek to a position in the middle, and then write one byte, while keeping the already existing data after that byte. It seems to me that I am unable to open a connection to a binary file in both read and write mode. I can open the "r+b" binary file connection and seek around, but I can't write to the file. And looking at the function

Dear all, I have written a little R program to convert images. See below. Within the loop over j (the filenames) memory consumption grows constantly. rm( ... ) inside the loop did not help. Memory does not grow if I remove the writeBin statements between the two #-------- marks. But obviously this is not solution I want... Thanks for any advice. Manfred Baumstark P.S. As I'm new to R:

Hi everyone, Has anyone written a parser in Java for either the ASCII or binary format produced by save()? I need to parse a single large 2D array that is structured like this: list( "32609_1" = c(-9549.39231289146, -9574.07159324482, ... ), "32610_2" = c(-6369.12526971635, -6403.99620977124, ... ), "32618_2" = c(-2138.29095689061, -2057.9229403233, ... ),