similar to: R CMD build cannot create vignettes on Windows if Makefile is used

Hi, On both Unix and Windows there is a mechanism to add variables to the environment when R is started. I noticed that, on Unix, this mechanism is not used when R is started normally at the command line but only when it's started using the 'R CMD' syntax. One problem with this is some lack of consistent cross-platform behaviour. For example: On Linux: $ echo $TEXINPUTS $

Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions

dear R users, I am using sweave to generate report for my data analysis. I recently updated R ro 2.8.0, and now I have the following results when compile the the tex file generated from R. This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (./Lajos.tex LaTeX2e <2005/12/01> Babel <v3.8h> and hyphenation patterns for english,

Dear R-users, I want to give a try to Sweave and Latex but I am having some problems compiling my .Rnw files within Kile. I have followed the recommendations given in http://tolstoy.newcastle.edu.au/R/e5/help/08/10/4277, but they do not seem to address my particular problem. I am using R 2.11.0 and Kile v 2.0.83 on an OpenSUSE11.2 installation (KDE 4.3 environment). According to the log (see

Hi, I recently compiled 1.6 on NT4 but I am having a problem with Sweave. Using the inbuilt 'Sweave-test-1.Rnw' file as an example: ------- > library(tools) > testfile <- file.path(.path.package("tools"), "Sweave", "Sweave-test-1.Rnw") ## create a LaTeX file Sweave(testfile) testfile <-

Hi all, A list of some possible issues: 1. In R 2.11.x, in: http://svn.r-project.org/R/branches/R-2-11-branch/share/texmf/ there are two files, jss.cls and jss.bst (for JSS), which appear to be new since 2.10.x. These files are not installed when building/installing R. It would appear that they are not included in: https://svn.r-project.org/R/branches/R-2-11-branch/share/Makefile.in The

I've been working on a LaTeX document that contains Sweave code and cannot get MikTeX to find the Sweave.sty file. I've added the c:\rw1081\share\texmf path in the MikTeX roots (I've ven added the path in the environment variables ) but to no avail. Is there a trick to getting Sweave installed correctly when using MikTeX on Windows XP? Do I need to move/copy the Sweave.sty file to the

Hello, can anyone explain the following error I get when trying to use the CHECK command to check a new version of my pakcage under 1.4.0? ****** ./R CMD check ~/GLMMGibbs.0.5.1/GLMMGibbs * checking for working latex ... OK * using log directory `/homef/jonm/R-1.4.0/bin/GLMMGibbs.Rcheck' ... <Installs library, documentation, and then performs various tests, including the example,

In the 'RWeaveLatexSetup' function in the 'tools' package in R 1.6.0 , the code below does not work (pdflatex can't find 'Sweave.sty'): if (stylepath) styfile <- file.path(R.home(), "share", "texmf", "Sweave") else styfile <- "Sweave" In R 1.5.1, that was: if(stylepath) styfile <-

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

Hi, This is a follow up to: https://stat.ethz.ch/pipermail/r-devel/2010-July/057921.html The Bioconductor daily builds have been reporting a lot of strange things lately on Windows using R-2.12. This started 2 or 3 months ago and things are not getting better with recent R-2.12. Here is a sample from today's build results. We use Windows Server 2003 R2 for the 32-bit builds, Windows

Hi, I am trying to create a Bioconductor package. Everything installs and checks fine. Now I'm on my last step, which is to create a vignette. I'm trying to test the Sweave process, to make sure I can build a vignette. I am stuck at the texi2dvi stage, which fails when I try to process the example Sweave-test-1.tex file. I am using Windows binary R distributions, and have the same

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

I want write article by russian language using Sweave. For cyrillic text LaTeX use T2A encoding \usepackage[T2A]{fontenc} But in Sweave.sty we find: \RequirePackage[T1]{fontenc} It is source of critical problem. For example Rnw file $ cat estimation.Rnw \documentclass[A4paper]{article} \usepackage[T2A]{fontenc} \usepackage[utf8]{inputenc} \usepackage[russian,english]{babel}

Dear all, I am getting an R CMD check warning about the PDF manual. I am having a hard time finding out what is wrong, here is the log of the Rd2pdf call. The full check (and other) log is at https://api.travis-ci.org/jobs/46373922/log.txt?deansi=true if anybody is interested, and the package itself is here: https://github.com/metacran/r-builder/tree/bintex/rbuildertest Thanks, Best, Gabor

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, Due to a change in Rd.sty a few days ago (https://github.com/wch/r-source/commit/620eb9a#diff-3bf3d821c6faae50cd6ec931f6f63296L272), the default installation of TeXLive 2009 or 2012 no longer works when building Rd to PDF. The error log is like this: =============== Converting Rd files to LaTeX ..... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean,

The make variable $(R_SHARE_DIR) seems to be available for use in tests/Makefile when running under Linux, but not Windows (R-2.6.2, R-2.6.1, R-2.7.0 alpha 2008-04-06, under Windows XP 64 bit, built locally for 32 bit). Is this intentional, or an oversight? Is it OK to use $(R_HOME)/share instead (seems to work OK)? I notice the following in /src/gnuwin32/front-ends/rcmdfn.c (from R-alpha

I'd like to make MikTeX the default TeX package in 2.2.0, but we still need to let people use other packages. The problem is that MikTeX wants a command line option --include-directory $R_HOME/share/texmf, while other packages specify includes via environment variables, and barf when they see the unexpected option. The choice should be controlled by the user's settings in the MkRules