similar to: packages checks on OS X with 2.12 devel

Dear R-helpers, I intend to upgrade R in Mac OS with updated R version and updated Mac OS version. I think my Mac notebook is produced with Mac x86_64, darwin9.8.0. I have updated my Mac OS to Mac OS X version 10.6.5. But, when I installed R 2.12.1, the "version" function still gave me information that R is based on old Mac OS. I need to know how can I update R to let it to fit for

I've been updating a package and, when installing a local devel version, I get an error "object 'confusionMatrix' not found whilst loading namespace". Looking around online, it appears that this might be related to loading a specific RData file, but it doesn't seem to be the case AFAICT. I've installed the devel version in the last week without issues and the

Hello! I stumbled upon something odd that took a while to track down, and I wanted to run it by here to see if I should submit a bug report. For randomly generated numbers (from a variety of distributions) rounding them to specifically 2 digits and then multiplying them by 100 produces strange results on about 8% of cases. The problematic numbers display as I would have expected, but do not

My box plot below is drawing its upper whisker all the way to the last point, instead of showing the point as an outlier. Am I misunderstanding, or is it a bug? Help(boxplot) states for the parameter ?range? that ?this determines how far the plot whiskers extend out from the box. If range is positive, the whiskers extend to the most extreme data point which is no more than range times the

Hi, source(file,echo=T) will not echo the last comment in "file" if it is the last line in the file. For instance, when sourcing a file containing the following lines #comment 1 a<-1 #comment 2 R will echo > #comment 1 > a<-1 What is the solution to have R echo all of the comment lines? Specific context: This problem arises e.g. in the context of help files (.Rd) whose

Le 15 oct. 2016 ? 9:56, mick crane <mick.crane at gmail.com> a ?crit: > I assume this means there are no emails in the INBOX. > send yourself a mail. This is actually one of the first thing I tried when I saw outgoing mails worked. I also tried sending mails from another address, hoping to receive an error message back, but nothing got received. I now think the INBOX itself doesn?t

Le 14 oct. 2016 ? 16:06, mick crane <mick.crane at gmail.com> a ?crit: > On 2016-10-14 13:43, Moi wrote: >> Hello, >> First of all, I'm sorry if you received this mail twice; I haven't received >> it the first time so I think it was lost. Second attempt. >> I've made some more tests and I still can't receive mails. >> Outlook doesn't

Hi. macosx 10.6.8 With R-2.13.1 and also revision 56948 I get the following repeatable segfault: wt118:~% R --vanilla --quiet > R.Version() $platform [1] "x86_64-apple-darwin9.8.0" $arch [1] "x86_64" $os [1] "darwin9.8.0" $system [1] "x86_64, darwin9.8.0" $status [1] "" $major [1] "2" $minor [1] "13.1" $year [1]

Hi, Here is a problem we see with the Mac and Windows binaries of rJava (0.9-3) currently available on CRAN for R-devel (i.e. under bin/macosx/leopard/contrib/2.16/ and bin/windows/contrib/2.16/): > library(rJava) > .jinit("gaggle/inst/jars/gaggleRShell.jar") Error in .Call("R_do_new_object", ClassDef, PACKAGE = "base") :

> > Offlist/OT - Sheer guess, straight out of my parts - maybe a cronjob to > rebuild the locate db or something similar is hammering it once a week? In the problem condition, there appears to be very little going on on the system. eg., root at server5:/tmp# /usr/local/bin/top last pid: 3828; load avg: 4.29, 3.95, 3.84; up 6+23:11:4407:12:47 79 processes: 78 sleeping, 1 on

When I try and start R-devel as follows: R --vanilla --arch ppc I see this, over and over again, ^C does not interrupt it and I have to close the terminal window: > Error in paste0(prefix, conditionMessage(e), "\n") : not a BUILTIN function In addition: Warning message: An unusual circumstance has arisen in the nesting of readline input. Please report using bug.report() >

Hi, I have a problem on my mac when trying in R to produce png images. I am getting this warnings with the ArrayQualityMetrics package: > arrayQualityMetrics(rma_fatBody, outdir="normData", force =T) The report will be written into directory 'normData'. KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 (loaded the KernSmooth namespace) libpng warning: Application built

> ?prompt [SNIP] ## Create a help file for each function in the .GlobalEnv: for(f in ls()) if(is.function(get(f))) prompt(name = f) > foo <- function(x) { cat(x, '\n')} > prompt(name="foo") Error in utils:::prompt(object, filename = filename, name = name, ...) : argument "object" is missing, with no default > version platform

platform x86_64-apple-darwin9.8.0 arch x86_64 os darwin9.8.0 system x86_64, darwin9.8.0 version.string R version 2.13.1 (2011-07-08) I am trying to write a function that takes a few objects as input. test <- function(directory, num = 1:100) { > } the argument, "num", has the default value. But when the function is called, it can take an array

For a package, I need to write a csv version of a data set to an R object. Right now, I use: out <- capture.output( write.table(x, sep = ",", na = "?", file = "", quote = FALSE,

Good Day, I fit a multivariate linear regression model with 3 dependent variables and several predictors using the lm function. I would like to use stepwise variable selection to produce a set of candidate models. However, when I pass the fitted lm object to step() I get the following error: Error from R: Error in drop1.mlm(fit, scope$drop, scale = scale, trace = trace, k = k, : no

Hi, I ran into some troubles while upgrading pigeonhole: crane dovecot: lda(petar): Error: sieve: Failed to access user storage (temporary failure) crane dovecot: lda(petar): Error: sieve: file storage: Could not find storage root directory; path was left unconfigured and autodetection failed After reading through the changelog, I noticed that there have been some changes in the script

I'm using caret to assess classifier performance (and it's great!). However, I've found that my results differ between R2.* and R3.* - reported accuracies are reduced dramatically. I suspect that a code change to kernlab ksvm may be responsible (see version 5.16-24 here: http://cran.r-project.org/web/packages/caret/news.html). I get very different results between caret_5.15-61 +

Hello, the compilation of the GUTS package on CRAN for Mac produces the following error messages: http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/GUTS-00install.html I guess it is some namespace collision, but I can not reproduce it on my machine, it compiles fine here. What is the cause and which setup do I need to reproduce the errors? R: version platform

Dear all, sorry to bother you with potentially known issue -- we have noticed that if we select data frame rows by rownames, we get some results back if the match can be done unambiguously, though the match is not perfect (see example), e.g. x{"2",] will return a row if there is a unique row with name starting with "2" (but may be "2375745"!) is that a