similar to: rbind on data.frame that contains a column that is also a data.frame

On Sun, May 26, 2019 at 4:06 AM Michael Chirico <michaelchirico4 at gmail.com> wrote: > > Have finally managed to come up with a fix after checking out sys.calls() > from within the as.Date.IDate debugger, which shows something like: > > [[1]] rbind(DF, DF) > [[2]] rbind(deparse.level, ...) > [[3]] `[<-`(`*tmp*`, ri, value = 18042L) > [[4]] `[<-.Date`(`*tmp*`,

Yes, thanks for following up on thread here. And thanks again for clearing things up, your email was a finger snap of clarity on the whole issue. I'll add that actually it was data.table's code at fault on the storage conversion -- note that if you use an arbitrary sub-class 'foo' with no methods defined, it'll stay integer. That's because [<- calls as.Date and then

I thought it would be good to summarize my thoughts, since I made a few hypotheses that turned out to be false. This isn't a bug in base R, in either rbind() or `[<-.Date`. To summarize the root cause: base::rbind.data.frame() calls `[<-` for each column of the data.frame, and there is no `[<-.IDate` method to ensure the replacement value is converted to integer. And, in fact,

I suspect there may be a bug in base::rbind.data.frame Below there is minimal example of the problem: m <- matrix (1:12, 3) dfm <- data.frame (c = 1 : 3, m = I (m)) str (dfm) m.names <- m rownames (m.names) <- letters [1:3] dfm.names <- data.frame (c = 1 : 3, m = I (m.names)) str (dfm.names) rbind (m, m.names) rbind (m.names, m) rbind (dfm, dfm.names) #not working rbind

When attempting to merge 3 data frames, one of which has fewer columns than the others, rbind.data.frame correctly refuses to perform the bind. However, the error message given is a bit obscure due to a logical bug in the match.names() internal function to rbind.data.frame. Illustration: ## Three data frames with same column variable names: > foo <- data.frame(v1 = c('a',

I'm not sure whether or not this is a bug, but I did isolate the line where the error is thrown: src/library/base/R/dataframe.R:1395. https://github.com/wch/r-source/blob/01374c3c367fa12f555fd354f735a6e16e5bd98e/src/library/base/R/dataframe.R#L1395 The error is thrown because the line attempts to set a subset of the rownames to NULL, which fails. R> options(error = recover) R>

A number of users have spotted a terminal problem with the 'debug' package under R2.4.0, along the lines of > mtrace(x) > x() Error in attr(value, "row.names") <- rlabs : row names must be 'character' or 'integer', not 'double' This arose from a bug in 'rbind.data.frame' in R2.4.0 itself. The bug is fixed in R2.4.0 patched, so the

On Sun, May 26, 2019 at 6:47 AM Joshua Ulrich <josh.m.ulrich at gmail.com> wrote: > > On Sun, May 26, 2019 at 4:06 AM Michael Chirico > <michaelchirico4 at gmail.com> wrote: > > > > Have finally managed to come up with a fix after checking out sys.calls() > > from within the as.Date.IDate debugger, which shows something like: > > > > [[1]]

Follow-up (inline) on my comment about a potential issue in `[<-.Date`. On Mon, May 27, 2019 at 9:31 AM Michael Chirico <michaelchirico4 at gmail.com> wrote: > > Yes, thanks for following up on thread here. And thanks again for clearing things up, your email was a finger snap of clarity on the whole issue. > > I'll add that actually it was data.table's code at fault

Debugging this issue: https://github.com/Rdatatable/data.table/issues/2008 We have custom class 'IDate' which inherits from 'Date' (it just forces integer storage for efficiency, hence, I). The concatenation done by rbind, however, breaks this and returns a double: library(data.table) DF = data.frame(date = as.IDate(Sys.Date())) storage.mode(rbind(DF, DF)$date) # [1]

Hi all, I'm having some trouble with rbind - this may be a bug or it may be my misunderstanding. If I do fileName <- paste(tempdir(),"test.txt",sep="/") file.create(fileName) x <- read.table(fileName, col.names=c("one","two","three")) I get a data frame with no rows, as documented. If I then try to rbind this with another data frame

Hello everyone I am trying to get one of my packages through R's QC. The package is clean for me under R-2.4.1, R-2.5.0, and R-devel, but Kurt gets > > * checking R code for possible problems ... WARNING > hypercube: no visible binding for global variable ?f? Function hypercube() [cut-&-pasted below] is intended to return an adjacency matrix for an n-dimensional

J?r?me, As a first attempt, how about the function below. It works (or not) by randomly sorting the rows and columns, then searching the table for "squares" with the corners = matrix(c(1,0,0,1),ncol=2) and subtracting them from 1 to give matrix(c(0,1,1,0),ncol=2) (and vice versa). Randomized matrices can be produced as a chain where each permutation is seeded with the previous one.

Dear all I'm trying to caculate the MLEs for parameters of Inverse Gaussian distribution (in a k-sample problem with common mean) by using EM-Algorithm. I found some package for EM-Algorithm that are useful for missing or incomplete data and are not helpful for solving my problem. (Exactly, the problem is: Let Xij, i=1,..,k , j=1,...,ni, be a random sample from IG(?,?i). So the

I'm trying to rbind two data frames, both with the same columns names. One of the columns is a variable with date-time and this variable is causing the rbind to fail--giving the error "Error in names(value[[jj]])[ri] <- nm : 'names' attribute [7568] must be the same length as the vector [9]" Is there a way to stack or rbind these two data frames even with this extended

Hello. My name is Akashah. i work at metabolic laboratory. From my study, i found that volcano plot can help a lot in my section.  i already studied about the volcano plot and get the coding to run in R software, unfortunately, there is may be something wrong with the coding. This is because  no graph appear, but no error (blue color text) was shown on the R console. Below is the coding for

Hi, I am tring to write a loop to compute this, ========================== x1=c( rep(-1,4), rep(1,4) ) x2=c( rep(c(-1,-1,1,1),2) ) x3=c( rep(c(-1,1),4) ) x1*x2 x1*x3 x2*x3 ======================== suppose i have x1,x2,x3 i want to compute their ' two factor interactions', x1x2,x1x3 and x2x3, I wrote ======================== for(i in 1:2){ for( j in i+1:3){ xij=c()

The compositional data xi=(x_i1,x_i2,...,x_in), for each fixed i , xij>0, and sum(xij)=1; I want to compare the mean( u_i) of several groups i.e. H0: u_1=u_2=...=u_N or H0: u_11=u_21=...=u_N1 Are there any ANOVA tpye tools to do this work in R? Thanks, WEN S Q [[alternative HTML version deleted]]

HELLO, anybody... could you help me to check the below coding for volcano. what is the mistake? what the plot could not display? # volcano_plot.r # # Author: Amsha Nahid, Jairus Bowne, Gerard Murray # Purpose: Produces a volcano plot # # Input: Data matrix as specified in Data-matrix-format.pdf # Output: Plots log2(fold change) vs log10(t-test P-value) # #

Hello. Here is my R code. I used the functional data . Now I need to use the functional data by applying the kernels instead of the xi, yi functions. Bonjour. Voici mon code en R . J'ai utiliser les donn?es fonctionnelles . Maintenant j'ai besoin d'utiliser les donn?es fonctionnelles en appliquant les noyaux ? la place des fontions xi, yi library(MASS)