similar to: Tips for debugging: R CMD check examples

Hi all, Is there any chance that readRDS and saveRDS might one day become read.rds and write.rds? That would make them more consistent with the other reading and writing functions. Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University http://had.co.nz/

Hi all, I frequently find that I've failed to export something in my NAMESPACE and hence my package doesn't work when it's imported into another package. Does anyone have suggestion for debugging this type of problem? R CMD check passes without any ns related errors on both the importee and the importer. I've attached a reproducible example - if you install the development

Hi all, Does anyone have a comprehensive list of recursive-type objects in R? is.recursive defines them as by exclusion: "most types of objects are regarded as recursive, except for vector types, ?NULL? and symbols (as given by ?as.name?)." I think this that means recursive objects are: * lists * pairlists * calls * expressions Did I miss anything? Hadley -- Assistant

Hi all, Are there base functions that do the equivalent of this? fliptb <- function(x) x[nrow(x):1, ] fliplr <- function(x) x[, nrow(x):1] Obviously not hard to implement (although it needs some more checks), just wondering if it had already been implemented. Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University http://had.co.nz/

Hi all, If a package suggests another package in its description, you can check it at runtime with requires. How do you do check if a package is available without loading it, if you only want to access one function in the package namespace. Thanks, Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University http://had.co.nz/

Hi all, Does anyone have an R implementation of the queplot (K.?M. Goldberg and B.?Iglewicz. Bivariate extensions of the boxplot. Technometrics, 34(3):pp. 307?320, 1992)? I'm struggling with the estimation of the asymmetry parameters. Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University http://had.co.nz/

Hi all, What's the equivalent to length(unique(x)) == 1 if want to ignore small floating point differences? Should I look at diff(range(x)) or sd(x) or something else? What cut off should I use? If it helps to be explicit, I'm interested in detecting when a vector is constant for the purpose of visual display. In other words, if I rescale x to [0, 1] do I have enough precision to get

Hi all, all.equal is generally very useful when you want to find the differences between two objects. It breaks down however, when you have two long strings to compare: > all.equal(a, b) [1] "1 string mismatch" Does any one know of any good text diffing tools implemented in R? Thanks, Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice

Hi all, Does any one know of any encryption/decryption algorithms in R? I'm not looking for anything robust - I want some way of printing output to the screen that the user can't read immediately, but can decrypt a little later. The main thing I don't want to the user to see is a number, so (e.g.) ROT13 isn't appropriate. Hadley -- Assistant Professor / Dobelman Family Junior

Hi all, I'm struggling with accessing a package dataset (munsell.map, stored in sysdata.rda) when that package is imported, not required. A simple reproducible example is: install.packages("munsell") munsell::mnsl("10B 4/6") # Error in match(col, munsell.map$name) : object 'munsell.map' not found library(munsell) munsell::mnsl("10B 4/6") # Function

Am I missing something obvious on how to draw multi-line plots in base graphics? In ggplot2, I can do: data(Oxboys, package = "nlme") library(ggplot2) qplot(age, height, data = Oxboys, geom = "line", group = Subject) But in base graphics, the best I can come up with is this: with(Oxboys, plot(age, height, type = "n")) lapply(split(Oxboys[c("age",

Hi all, Is there a straight-forward, cross-platform way of determining if a user has all the tools needed to develop R packages (i.e. gcc etc)? It doesn't need to be 100%, but should give a rough idea. One idea I had was simply to see if system("R CMD install --help") worked. Hadley -- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University

Hi all, What's the official name for the value that represents a missing argument? e.g. formals(plot)$x str(formals(plot)$x) deparse(formals(plot)$x) is.symbol(formals(plot)$x) What's the correct way to create an object like this? (for example if you are manipulating the formals of a function to add an argument with no default value, as in http://stackoverflow.com/questions/3892580/).

readNEWS() states: Read R's ?NEWS? file or a similarly formatted one. This is an experimental feature, new in R 2.4.0 and may change in several ways and news() also indicates that this tool is supposed to work with non-R news files. However, I've not been able to get readNEWS to read a package news file, even when following the format indicated in news(). Looking at the

Hi, Is there such a thing? If no: is it easily simulated? thanks, Joh

Hi all, I'm trying to understand how the search path and namespaces interact. For example, take the devtools package which suggests the testthat package. Here's what the search path looks like after I load each of those packages: > library(devtools) > search() [1] ".GlobalEnv" "package:devtools" "package:stats" [4]

library(plyr) n<-100000 grp1<-sample(1:750, n, replace=T) grp2<-sample(1:750, n, replace=T) d<-data.frame(x=rnorm(n), y=rnorm(n), grp1=grp1, grp2=grp2) system.time({ d$avx1 <- ave(d$x, list(d$grp1, d$grp2)) d$avy1 <- ave(d$y, list(d$grp1, d$grp2)) }) # user system elapsed # 39.300 0.279 40.809 system.time({ d$avx2 <- ave(d$x, interaction(d$grp1, d$grp2, drop =

Hi all, The help for delayedAssign suggests that you can use substitute to access the expression associated with a promise, and the help for substitute says: "If it is a promise object, i.e., a formal argument to a function or explicitly created using ?delayedAssign()?, the expression slot of the promise replaces the symbol. But this doesn't seem to work: > a <- 1 > b <- 2

Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # * installing to library ?/Users/hadley/R? # ERROR: dependency ?ascii? is not available for package ?rapport? But: ls

Hi all, I've been trying to get a better handle on what manipulations lead R to duplicate a vector, creating small experiments and using tracemem to observe what happens (all in 2.15.1). That's lead me to a few questions, illustrated using the snippet below. x <- 1:10 tracemem(x) # [1] "<0x1058f8238>" x[5] <- 5 # tracemem[0x1058f8238 -> 0x105994ab0]: x[11] <-