Displaying 20 results from an estimated 1000 matches similar to: "00LOCK and nfs"
2012 Jan 15
1
configure-args for R CMD build
When I build a package containing a vignette, the package gets
installed to build the vignette. However, it appears that R CMD build
does not allow for --configure-args. In my case, I have a C library
installed in a non-standard position, and I need to tell the package
where it is. It works fine with R CMD INSTALL, but R CMD build
complains
Warning: unknown option
2010 Feb 24
1
build, data and vignettes
Based on some testing it seems to me that if I have a package with
a dataset in /data
a Sweave vignette in inst/doc (but no associated pdf file)
the vignette loads the data in /data through
data(dataset)
and I do a
R CMD build
R will try to build the pdf version of the vignette, but will be
unable to find the dataset in data because the package is not yet
installed. However, if I do
2005 Oct 18
1
cross-compiling tools
Hi
We have been cross-compiling windows packages under Linux using the
excellent Makefile and instructions by Tony Rossini and Jun Yan.
Specifically we have been cross-compiling c++ code and it used to work.
Now the minGW tools located at www.stats.ox.ac.uk/pub/Rtools have
changed from version 4 to version 5, and our cross-compiling have
stopped working.
Inspecting the tarball we are
2005 Sep 09
2
C macros and Makevars/package building
Hi
We are currently embedding a rather large C++ library in R (BioC),
and we want some comments on the portability of how we have approach
this.
First of, we are not really able to do much about the portability of
the basic library, which of course is the main question :) We have an
approach which seems to work, I just want a bit of feedback on it....
The way we integrate it into R is
2011 May 19
1
r-2.13 fails make check
I am only reporting this because it is the current release branch and
not devel.
R-2.13 from svn revision 55957 builds fine, but fails make check.
This happened with a fresh svn checkout 12 hours ago and it still
happens as of now. Two days ago I could build R-2.13 and it passed
make check on the same system, so I doubt it is a system problem. But
just in case my system details are a fresh
2009 Jun 24
2
loadNamespace and useDynLib
I am considering a package with a namespace (Rgraphviz from Bioc). I
essentially want to have some error handling for loading the dll,
something like wrapping it into tryCatch or similar (reason: see
below). Right now I am loading the dynamic libraries by useDynLib in
my NAMESPACE file. When I look at the code from loadNamespace, I have
the impression that what I want is impossible
2017 May 19
2
test fails when requesting LC_CTYPE
On RedHat Enterprise Linux 6, the test below fails (this is using the stock
GCC 4.4.7) from R-devel r72707. LC_CTYPE is unset when I run it, but
LANG=en_US.UTF-8
It also failed "yesterday" where as far as I recall the test code looked a
bit different.
Best,
Kasper
> ## Results differed by platform, but some gave incorrect results on
string 10.
>
>
> ## str() on large
2015 Aug 15
1
Why not pthreads on Windows in 'parallel' package?
Aaaah ...
and argh - I should have better not to post R question at midnight,
especially when I know it forks the process and it's not using threads.
Brain meltdown. (So, we'll proceed trying to use pthreads in matrixStats
also for Windows). Sorry for the noise and thanks Kasper.
Henrik
On Aug 15, 2015 02:52, "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
wrote:
2020 Oct 02
2
timezone tests and R-devel
Yes, the potential issue I see is that
make check
fails when I explicitly set TZ. However, I set it to be the same as what
the system reports when I login.
Details: The system (RHEL) I am working on has
$ strings /etc/localtime | tail -n 1
EST5EDT,M3.2.0,M11.1.0
$ date +%Z
EDT
$ echo $TZ
US/Eastern
On Fri, Oct 2, 2020 at 9:48 AM Sebastian Meyer <seb.meyer at fau.de> wrote:
> Thank
2017 Oct 04
1
R CMD Rd2pdf and macros
No, I do not get the same as you.
I have tested with R-devel and R-patched compiled today. When I do
R CMD Rd2pdf mpra
I get (as reported a few days ago)
Hmm ... looks like a package
Converting Rd files to LaTeX Error : mpra/man/mpra-package.Rd:6: file
'./DESCRIPTION' does not exist
whereas you (Kurt) reports that this works on zTree.
When I do
R CMD Rd2pdf mpra/man
I get
- a
2017 May 20
1
test fails when requesting LC_CTYPE
>>>>> Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
>>>>> on Fri, 19 May 2017 20:09:24 -0400 writes:
> I rebuilt R with
> export LC_CTYPE=en_US.UTF-8
> and the test still fail. Surprisingly, when I run R from the bin directory
> and execute the test code, it runs without error:
>> oloc <-
2010 Feb 05
1
Reg: Rgraphviz installation
Hi,
Could you guide me to upload Rgraphviz library. I have installed Graphviz 2..20.3.1 , even followed the instructions in Read me, but I cannot load the package.
There is a error message "This application has failed to start becaues libcdt-4.dll was not found. Re-installing the application may fix this problem", whenever we plan to load the package.
Thanks in Advance
Deepak
2006 Nov 06
5
memory issues with new release (PR#9344)
Full_Name: Derek Elmerick
Version: 2.4.0
OS: Windows XP
Submission from: (NULL) (38.117.162.243)
hello -
i have some code that i run regularly using R version 2.3.x . the final step of
the code is to build a multinomial logit model. the dataset is large; however, i
have not had issues in the past. i just installed the 2.4.0 version of R and now
have memory allocation issues. to verify, i ran
2015 Mar 27
2
About removing zlib from R-devel
Related to this question:
I have installed bzip2 1.0.6 by hand, but configure still fails. When I
look at config.log I get the following
configure:34150: /usr/bin/gcc -std=gnu99 -o conftest -g -O2 -march=amdfam10
-g -O2 -march=amdfam10 -L/usr/local/lib64 confte
st.c -lbz2 -lz -lrt -ldl -lm >&5
conftest.c: In function 'main':
conftest.c:250: warning: initialization discards
2016 Mar 24
3
summary( prcomp(*, tol = .) ) -- and 'rank.'
I agree with Kasper, this is a 'big' issue. Does your method of taking only
n PCs reduce the load on memory?
The new addition to the summary looks like a good idea, but Proportion of
Variance as you describe it may be confusing to new users. Am I correct in
saying Proportion of variance describes the amount of variance with respect
to the number of components the user chooses to show? So
2016 Mar 24
3
summary( prcomp(*, tol = .) ) -- and 'rank.'
Following from the R-help thread of March 22 on "Memory usage in prcomp",
I've started looking into adding an optional 'rank.' argument
to prcomp allowing to more efficiently get only a few PCs
instead of the full p PCs, say when p = 1000 and you know you
only want 5 PCs.
(https://stat.ethz.ch/pipermail/r-help/2016-March/437228.html
As it was mentioned, we already
2015 Aug 14
2
Why not pthreads on Windows in 'parallel' package?
On Windows there are a few 'pthreads' implementation, e.g.
pthreads-w32 and winpthreads
[https://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Using-pthreads].
We're thinking of giving them a try for the matrixStats package, and
basic tests indicates it works, but since Windows pthreads are not
used by core R (or?) I've got a little bit worried that we will face
overwhelming
2019 Sep 04
2
possible bug in R's configure check for C++11 features
I am trying to compile R under a new setup, and frankly, I have had a lot
of problems, but I think the stuff below points to a possible bug in R's
(custom) configure checks for C++11/14/17, but not for C++98.
This is a report about R from the R-3-6 branch, with a svn checkout from
today, revision r77135.
In my case the compiler name is x86_64-conda_cos6-linux-gnu-g++, not g++. I
denote this
2017 Sep 27
3
possible bug in R CMD Rd2pdf
When I include the macros \packageAuthor, \packageDescription,
\packageTitle, \packageMaintainer in a XX-package.Rd file, R CMD Rd2pdf
fails with
$ R CMD Rd2pdf mpra
Hmm ... looks like a package
Converting Rd files to LaTeX Error : mpra/man/mpra-package.Rd:6: file
'./DESCRIPTION' does not exist
This does not happen if I comment out 4 occurrences of these 4 macros in
mpra-package.Rd.
2012 Aug 24
5
include dll in R-package
Hi,
We have several projects in the center done by researchers over years
in Fortran, there are copy right issues etc to prevent us from
giving away the source codes, but a lot of social scientist are
interested to use the program. We tried to use dlls to make plugins
(available in our website) in various statistics platforms
(SAS, STATA and R) to make it available to general public.
We used