similar to: build, data and vignettes

When I build a package containing a vignette, the package gets installed to build the vignette. However, it appears that R CMD build does not allow for --configure-args. In my case, I have a C library installed in a non-standard position, and I need to tell the package where it is. It works fine with R CMD INSTALL, but R CMD build complains Warning: unknown option

Hello! I''m looking for assistance EXTENDING an example from the Agile Web Development With Rails book: Composing Data with Aggregation (page 324). I''m trying to map three columns to a single Ruby object. However, unlike the example in the Agile Web Development book, the three columns I want to map into one object come from THREE DIFFERENT models. I want to map the following

Hi List I have a dataframe (~1,200,000 rows deep) and I'd like to conditionally reorder groups of rows in this dataframe. I would like to reorder any rows where the Chr.Strand column contains a '-' but reorder within subsets delineated by the Probe.Set.Name column. # toy example #### library(plyr) negStrandGene <- data.frame(Probe.Set.Name =

This group impresses me, so far I have been helped with all my questions within 24 hours. Thanks. Therefore another one. I am used to programs (such as STATA) where observations with missing values that are included in a model are simply ignored in the analysis. So far I have not been able to figure out how to deal with missing values in R and have solved the problem by deleting observations

Hi, is there any package/function in Bioconductor that can do this: if given the chromosome positions of a fragment, find out all genes within, and with the information about which strand is the sense strand. And vice versa. Thanks a lot. ----- Appreciate your time & attention! -- View this message in context: http://www.nabble.com/list-genes-w-n-a-genomic-fragment-tp18331452p18331452.html

Hi All, I'm trying to take a numerical vector and produce a new vector of the same length where each element in the first is placed into a category given by a 'breaks-like' vector. The values in the result should equal the lower bounds of each category as defined in the breaks vector. I suspect that a vectorized solution is pretty simple, but I can't seem to figure it

I have a habtm relationship between two models. What I want to do is find items that aren''t related. So like if you had authors <-> posts, how would you find authors who don''t have any posts? Or posts that don''t have an author ? Thanks, Alex Strand [astrand@razorcom.com] Razorcom www.razorcom.com

Great R people, I have noticed a strange behaviour in read.delim() and friends in the R 2.7.0 version. I will describe you the problem and also the solution I already found, just to be sure it is an expected behaviour and also to tell people, who may experience the same difficulty, a way to overcome it. And also to see if it is a proper behaviour or maybe a correction is needed. Here is the

Hi All, I have a cluster of four nodes and one will not join the cluster. I have two IPs on each node, one external and one internal. I have tried changing around the IPs in the /etc/ocfs2/cluster.conf and that helped - at least I recovered three of the machines. Any suggestions on where else to look? Best Regards John (23359,2):o2net_connect_expired:1637 ERROR: no connection established with

Hi all, I am given the a data frame in which one of the columns has more information together- see column 4, peak_loc: chr start end peak_loc cluster_TC strand peak_TC 1 chr1 564620 564649 chr1:564644..564645,+ 94 + 10 2 chr1 565369 565404 chr1:565371..565372,+ 217 + 8 3 chr1 565463 565541 chr1:565480..565481,+ 1214 + 15 4 chr1

I am running into a problem with the 00LOCK file and .nfs files. It seemed to be caused by the following R is installed on NFS user A has loaded pkg_A containing a dynamically loaded library user B (the administrator) runs install.packages("pkg_A") as the final part of the installation process the 00LOCK directory is removed this creates a .nfs file because user A has the

Hello, I'm setting up a new server on 5.4 and noticed this in the perl.spec file: * Mon Jul 21 2008 Stepan Kasal - 4:5.8.8-14.el5 - add two patches, which... - Resolves: #435505, #431041 - remove %%define threading, the non-threading variant is not supported, Related: 435376 That comment wasn't there when I set up a server on 5.2 a few months back and the %define threading option

Hello, This message just came across on another mailing list I am on. The little dig on Unix as being old and Windows being new got me annoyed so I wanted to reply, but with some real contacts that he asks for at the end. I figured there might be some folks who could help him out. Feel free to reply on list or to me, and I will forward on your contact info. Message follows: " Our

Hello, I'm trying to use coxph() function to fit a very simple Cox proportional hazards regression model (only one covariate) but the parameter space is restricted to an open set (0, 1). Can I still obtain a valid estimate by using coxph function in this scenario? If yes, how? Any suggestion would be greatly appreciated. Thanks!!! [[alternative HTML version deleted]]

Greetings I run into a compilation error when updating to mgcv_1.1-7 in R 2.0.0 on OS X 10.3. Note that other pacakges have compiled nicely. Some details are given below, but in short it looks like it's seeking for /usr/local/lib/powerpc-apple-darwin6.8/3.4.2/ which I don't have. But I do have /usr/lib/gcc/darwin/3.3 i.e a lower version of GCC in a different directory. More

Does IE and Windows Media Player (any version) work with Wine 0.9.10 or the latest CVS version? If so, how to install? I've tried but failed: * With the latest CVS and sidenet-1.9.1, using option "IE6 with WMP6 installation", the IE setup fails with "The download location information is damaged". * With Wine 0.9.10, using the FC4 RPM: The same as above. * If I try

I've joined a Windows 2003 server to a domain hosted by a Samba 2.2.8 machine. It works fine to log in locally at the console, but not via terminal services. The login screen says: "You do not have access to logon to this session." The Event viewer says: "Failed to load Terminal Server Profile path. Note that the profile path must be less than 256 characters in

Will R run under Windows Pocket PC? Yours Lars Strand [[alternative HTML version deleted]]

The included patch adds a new option to the ssh client: -d fd Read the password from file descriptor fd. If you use 0 for fd, the passphrase will be read from stdin. This is basically the same as GPG:s parameter --passphrase-fd. Flames about why this is a bad idea goes into /dev/null. I really need to do this. There are lots of ugly Expect-hacks out there, but I want a more clean

Hello, I'm trying to install CentOS 5.2 on an HP 6730s notebook. All's going well except for one little item -- the networking. Never thought I'd have trouble with an Ethernet adapter, so I didn't even check before buying this machine; it was cheap. The adapter is a Marvell Yukon 88E8042 PCI-E Fast Ethernet controller. I can't find a Linux driver for it except one that