similar to: R CMD check error with the GNU Scientific Library

"Writing R Extensions" says {quotes} If you have a crash which gives a core dump you can use something like gdb /path/to/R/bin/exec/R core.12345 to examine the core dump. If core dumps are disabled... {unquotes} sadly it doesn't go on to say how to enable if core dumps are disabled. I understand that in bash I need to do $ ulimit -c unlimited but this doesn't seem to

Hi, I am having real problems downloading the package 'QRMlib'. The tar.gz file is shown here: http://cran.r-project.org/src/contrib/Archive/QRMlib/ I have downloaded this to my local folder and entered the following command: nstall.packages("myLocalFolder/QRMlib_1.4.5.1.tar.gz", repos = NULL) but I am getting the following error message Installing package(s) into

What is the problem here? I did an install package from the Rgui menu. Windows Vista <SNIP> trying URL 'http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.9/mvtnorm_0.9-8.zip' Content type 'application/zip' length 236089 bytes (230 Kb) opened URL downloaded 230 Kb trying URL 'http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.9/QRMlib_1.4.4.zip' Content type

The docs tell me: "The header files define USING_R, which should be used to test if the code is indeed being used with R." but surely you only get that if you #include <R.h>, which you can only do if you are using R. If you have code that you might want to compile in R and for other purposes, how can you detect this? As an example, suppose I have some C that uses GSL to get

I created a EM algorithm for Generalized hyperbolic distribution. I want to estimate mutheldaplus, sigmatheldaplus, betasigmaplus in my code. After getting use these value , then my iteration have to be begin of this code. But I can not to do iteration part. Can you help me use my code and get iteration ? Do know any useful code for EM algorithm for Generalized Hyperbolic library(QRMlib)

On 13/09/2017 5:23 AM, Brayford, David wrote: > When I try to install gsl in R I get the error Need GSL version >= 1.12 . However, I have version 2.3 of gsl installed on the system, which is picked up earlier in the configure process (see below). Is it possible for someone to fix this error in the configure script? > > checking for gsl-config...

When I try to install gsl in R I get the error Need GSL version >= 1.12 . However, I have version 2.3 of gsl installed on the system, which is picked up earlier in the configure process (see below). Is it possible for someone to fix this error in the configure script? checking for gsl-config... /lrz/sys/libraries/gsl/2.3/bin/gsl-config checking if GSL version >= 1.12... checking for gcc...

I have an upcoming JASA paper with an iid sampling algorithm for Bayesian Generalized Linear models (e.g., Logit, Poisson Regression, and Conditional Logit models with multivariate normal priors). At this point, I have implemented the algorithms in C and hope to make the functions and corresponding source code available through an R package. I have successfully created the code necessary to

On 13/09/2017 9:10 AM, David Brayford wrote: > Hi Duncan, > > The output of gsl-config --version > 2.3 > > The output of gsl-config --cflags > -I/lrz/sys/libraries/gsl/2.3/include > > The output of gsl-config --libs > -L/lrz/sys/libraries/gsl/2.3/lib -lgsl -lgslcblas -lm > > gsl_version.h cat output > #define GSL_VERSION "2.3" > #define

Dear R users: I have a problem when installing the R package *gsl*. The procedure is as follows: (1) Since it needs a GSL vesion >=1.12, and the GSL library on the serve I use is too old, I download GSL 1.15 and install it in my own account, such as $HOME/local/gsl. Because I do not have root access, so it cannot be installed in standard folder. (2) Then I download the source code of R

Hi, I'm trying to install the gsl wrapper source code (http://cran.r-project.org/src/contrib/gsl_1.9-8.tar.gz) on a Linux system (OpenSuse 11.1), but encountering the following problem. I've already installed 'gsl' version 1.14 (ftp://ftp.gnu.org/gnu/gsl/gsl-1.14.tar.gz) on the system. What's missing? Thanks a lot... > R CMD INSTALL gsl * installing to library

Hi all, I am new to R and am writing after having contacted Robin Hankin, who maintains the R gsl wrapper. I am trying to use an AFNI (neuroimaging analysis) program that depends on the R gsl package. When I try to use the script I wrote, I get an error that led me to suspect the gsl package was a culprit. When I do library("gsl") within R, I get: Error in dyn.load(file, DLLpath

Dear fellow R users, I am now investing time in learning how to use compiled C code to produces functions that can be used in R. I am just starting, and there is much that I need to learn, so I have a question that might be straight forward. I am learning how to use function in the C library GSL (gnu scientific library), to write C code, that I then plant to use in R. Is there any problem in

I have written an R package which contains C source code (in the directory pkg/src). Only a subset of the functions in the pkg/R directory contain a .C() call to the functions in the pkg/src directory. The rest of the package will still work and be useful without the functions containing a .C() call. To compile the code in pkg/src requires the GSL library. This is detailed in the

On 01/11/16 21:08, Kirill M?ller wrote: > Did you reinstall the gsl package [1]? Apparently not. I did a complete update.packages() which reinstalled a great number of packages (I have a great number in my personal library). There were complaints about 4 packages, one of which was "copula", but "gsl" was not one of them. I would have *thought* that if "gsl"

hello I maintain the gsl R package, and many users have recently reported that the package does not install from source under macosx 10.9 ("mavericks"). Users typically install the gnu GSL library and are able to compile and run a small "hello world" program which executes some of the Bessel functionality of the library; but under mavericks the configure script (which uses

I am trying to install the gls package (a wrapper for GNU scientific library special functions) package under Ubuntu 5.10. I have gls-bin (the debian GNU Scientific Library binary package). When I try to install the R package, I receive the following. > install.packages("gsl",dependencies=T) Warning in install.packages("gsl", dependencies = T) : argument

Full_Name: Levi Waldron Version: 2.5.1 OS: Ubuntu Gutsy Submission from: (NULL) (206.248.157.88) I installed libgsl0-dev then tried to install the gsl cran package, unsuccessfully (see output below). As a workaround I created a symbolic link to /usr/bin/gcc-4.2, ie: sudo ln -s /usr/bin/gcc-4.1 /usr/bin/gcc-4.2 The correct behavior of the gsl package should be to use the executable

I have just upgraded to the latest R (3.3.2) and thought I should update my library of contributed packages. Ran into problems with "copula". Got the error: > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object '/home/rolf/Rlib/gsl/libs/gsl.so': > libgsl.so.0: cannot open shared object file: No such file or directory So after a bit

I am developing an R package, eiR, which depends on another C library, GNU scientific library (GSL). In order to make life easier for the user, it would be nice to not have this as an external dependency, thus I would like to wrap this library in another R package, say GSLR for example. Thus far I know how to do this. The C code in eiR requires the .so library and the header files from GSL